Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15500

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15495 and SGL_RS15500 are separated by 172 nucleotidesSGL_RS15500 and SGL_RS15505 overlap by 4 nucleotidesSGL_RS15505 and SGL_RS15510 overlap by 4 nucleotides SGL_RS15495: SGL_RS15495 - Fe(3+) ABC transporter substrate-binding protein, at 2,924,779 to 2,925,819 _RS15495 SGL_RS15500: SGL_RS15500 - hypothetical protein, at 2,925,992 to 2,926,786 _RS15500 SGL_RS15505: SGL_RS15505 - pentapeptide repeat-containing protein, at 2,926,783 to 2,927,283 _RS15505 SGL_RS15510: SGL_RS15510 - ATP-binding protein, at 2,927,280 to 2,929,700 _RS15510 Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -2 -1 0 1at 2925.003 kb on + strand, within SGL_RS15495at 2925.040 kb on - strand, within SGL_RS15495at 2925.056 kb on - strand, within SGL_RS15495at 2925.203 kb on - strand, within SGL_RS15495at 2925.207 kb on + strand, within SGL_RS15495at 2925.234 kb on - strand, within SGL_RS15495at 2925.272 kb on + strand, within SGL_RS15495at 2925.352 kb on + strand, within SGL_RS15495at 2925.359 kb on - strand, within SGL_RS15495at 2925.580 kb on - strand, within SGL_RS15495at 2925.580 kb on - strand, within SGL_RS15495at 2925.659 kb on - strand, within SGL_RS15495at 2925.689 kb on + strand, within SGL_RS15495at 2925.762 kb on - strandat 2925.909 kb on - strandat 2926.053 kb on + strandat 2926.084 kb on - strand, within SGL_RS15500at 2926.248 kb on - strand, within SGL_RS15500at 2926.248 kb on - strand, within SGL_RS15500at 2926.248 kb on - strand, within SGL_RS15500at 2926.343 kb on + strand, within SGL_RS15500at 2926.351 kb on - strand, within SGL_RS15500at 2926.429 kb on - strand, within SGL_RS15500at 2926.489 kb on - strand, within SGL_RS15500at 2926.510 kb on - strand, within SGL_RS15500at 2926.544 kb on - strand, within SGL_RS15500at 2926.544 kb on - strand, within SGL_RS15500at 2926.571 kb on + strand, within SGL_RS15500at 2926.600 kb on - strand, within SGL_RS15500at 2926.623 kb on + strand, within SGL_RS15500at 2926.916 kb on - strand, within SGL_RS15505at 2927.025 kb on - strand, within SGL_RS15505at 2927.102 kb on + strand, within SGL_RS15505at 2927.115 kb on - strand, within SGL_RS15505at 2927.182 kb on + strand, within SGL_RS15505at 2927.182 kb on + strand, within SGL_RS15505at 2927.201 kb on - strand, within SGL_RS15505at 2927.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,925,003 + SGL_RS15495 0.22 -2.4
2,925,040 - SGL_RS15495 0.25 -2.0
2,925,056 - SGL_RS15495 0.27 -2.0
2,925,203 - SGL_RS15495 0.41 -1.8
2,925,207 + SGL_RS15495 0.41 -1.5
2,925,234 - SGL_RS15495 0.44 -2.0
2,925,272 + SGL_RS15495 0.47 -2.1
2,925,352 + SGL_RS15495 0.55 -1.7
2,925,359 - SGL_RS15495 0.56 -2.1
2,925,580 - SGL_RS15495 0.77 -2.2
2,925,580 - SGL_RS15495 0.77 -1.4
2,925,659 - SGL_RS15495 0.85 -1.7
2,925,689 + SGL_RS15495 0.87 -0.0
2,925,762 - -1.7
2,925,909 - -0.7
2,926,053 + -1.9
2,926,084 - SGL_RS15500 0.12 -1.5
2,926,248 - SGL_RS15500 0.32 -1.5
2,926,248 - SGL_RS15500 0.32 -1.8
2,926,248 - SGL_RS15500 0.32 -2.2
2,926,343 + SGL_RS15500 0.44 -2.2
2,926,351 - SGL_RS15500 0.45 -1.7
2,926,429 - SGL_RS15500 0.55 -1.4
2,926,489 - SGL_RS15500 0.63 -1.5
2,926,510 - SGL_RS15500 0.65 -2.0
2,926,544 - SGL_RS15500 0.69 -2.4
2,926,544 - SGL_RS15500 0.69 -1.2
2,926,571 + SGL_RS15500 0.73 -1.7
2,926,600 - SGL_RS15500 0.76 -1.8
2,926,623 + SGL_RS15500 0.79 -1.7
2,926,916 - SGL_RS15505 0.27 -2.1
2,927,025 - SGL_RS15505 0.48 -1.0
2,927,102 + SGL_RS15505 0.64 -1.6
2,927,115 - SGL_RS15505 0.66 -2.2
2,927,182 + SGL_RS15505 0.80 -2.1
2,927,182 + SGL_RS15505 0.80 -2.3
2,927,201 - SGL_RS15505 0.83 -1.8
2,927,399 + +0.1

Or see this region's nucleotide sequence