Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15370

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15360 and SGL_RS15365 are separated by 8 nucleotidesSGL_RS15365 and SGL_RS15370 are separated by 117 nucleotidesSGL_RS15370 and SGL_RS15375 are separated by 28 nucleotidesSGL_RS15375 and SGL_RS15380 are separated by 161 nucleotides SGL_RS15360: SGL_RS15360 - aldehyde dehydrogenase family protein, at 2,898,710 to 2,900,080 _RS15360 SGL_RS15365: SGL_RS15365 - TIGR04283 family arsenosugar biosynthesis glycosyltransferase, at 2,900,089 to 2,900,862 _RS15365 SGL_RS15370: SGL_RS15370 - DnaJ C-terminal domain-containing protein, at 2,900,980 to 2,901,978 _RS15370 SGL_RS15375: SGL_RS15375 - class I SAM-dependent methyltransferase, at 2,902,007 to 2,902,669 _RS15375 SGL_RS15380: SGL_RS15380 - SulP family inorganic anion transporter, at 2,902,831 to 2,904,501 _RS15380 Position (kb) 2900 2901 2902Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2900.093 kb on - strandat 2900.249 kb on + strand, within SGL_RS15365at 2900.256 kb on - strand, within SGL_RS15365at 2900.260 kb on + strand, within SGL_RS15365at 2900.312 kb on - strand, within SGL_RS15365at 2900.708 kb on + strand, within SGL_RS15365at 2900.796 kb on - strandat 2900.848 kb on - strandat 2900.866 kb on + strandat 2900.877 kb on + strandat 2900.877 kb on + strandat 2900.877 kb on + strandat 2900.879 kb on - strandat 2900.886 kb on - strandat 2901.145 kb on + strand, within SGL_RS15370at 2901.221 kb on + strand, within SGL_RS15370at 2901.248 kb on + strand, within SGL_RS15370at 2901.256 kb on - strand, within SGL_RS15370at 2901.333 kb on + strand, within SGL_RS15370at 2901.424 kb on + strand, within SGL_RS15370at 2901.429 kb on + strand, within SGL_RS15370at 2901.462 kb on - strand, within SGL_RS15370at 2901.583 kb on + strand, within SGL_RS15370at 2901.584 kb on - strand, within SGL_RS15370at 2901.763 kb on + strand, within SGL_RS15370at 2901.805 kb on + strand, within SGL_RS15370at 2901.821 kb on + strand, within SGL_RS15370at 2902.153 kb on - strand, within SGL_RS15375at 2902.280 kb on + strand, within SGL_RS15375at 2902.288 kb on + strand, within SGL_RS15375at 2902.334 kb on - strand, within SGL_RS15375at 2902.442 kb on + strand, within SGL_RS15375at 2902.512 kb on + strand, within SGL_RS15375at 2902.636 kb on + strandat 2902.721 kb on + strandat 2902.772 kb on + strandat 2902.785 kb on - strandat 2902.835 kb on + strandat 2902.936 kb on + strandat 2902.943 kb on - strandat 2902.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,900,093 - -0.0
2,900,249 + SGL_RS15365 0.21 -0.6
2,900,256 - SGL_RS15365 0.22 +0.0
2,900,260 + SGL_RS15365 0.22 +0.3
2,900,312 - SGL_RS15365 0.29 +0.2
2,900,708 + SGL_RS15365 0.80 +0.1
2,900,796 - +0.1
2,900,848 - -0.2
2,900,866 + +0.5
2,900,877 + +0.4
2,900,877 + -0.3
2,900,877 + +0.4
2,900,879 - -0.2
2,900,886 - +0.1
2,901,145 + SGL_RS15370 0.17 -3.9
2,901,221 + SGL_RS15370 0.24 -3.0
2,901,248 + SGL_RS15370 0.27 -4.0
2,901,256 - SGL_RS15370 0.28 -2.0
2,901,333 + SGL_RS15370 0.35 -1.6
2,901,424 + SGL_RS15370 0.44 -4.3
2,901,429 + SGL_RS15370 0.45 -0.3
2,901,462 - SGL_RS15370 0.48 -0.1
2,901,583 + SGL_RS15370 0.60 -5.4
2,901,584 - SGL_RS15370 0.60 -4.8
2,901,763 + SGL_RS15370 0.78 -1.6
2,901,805 + SGL_RS15370 0.83 -1.5
2,901,821 + SGL_RS15370 0.84 -4.3
2,902,153 - SGL_RS15375 0.22 +0.5
2,902,280 + SGL_RS15375 0.41 +0.1
2,902,288 + SGL_RS15375 0.42 +0.3
2,902,334 - SGL_RS15375 0.49 +0.1
2,902,442 + SGL_RS15375 0.66 -0.3
2,902,512 + SGL_RS15375 0.76 +0.1
2,902,636 + +0.5
2,902,721 + +0.2
2,902,772 + -0.0
2,902,785 - +0.5
2,902,835 + -0.0
2,902,936 + +0.4
2,902,943 - -0.1
2,902,949 + -0.1

Or see this region's nucleotide sequence