Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14045

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14040 and SGL_RS14045 are separated by 191 nucleotidesSGL_RS14045 and SGL_RS14050 are separated by 163 nucleotidesSGL_RS14050 and SGL_RS14055 are separated by 116 nucleotides SGL_RS14040: SGL_RS14040 - excinuclease ABC subunit UvrB, at 2,610,706 to 2,612,715 _RS14040 SGL_RS14045: SGL_RS14045 - hypothetical protein, at 2,612,907 to 2,613,317 _RS14045 SGL_RS14050: SGL_RS14050 - photosystem II reaction center X protein, at 2,613,481 to 2,613,600 _RS14050 SGL_RS14055: SGL_RS14055 - phosphoribosylglycinamide formyltransferase, at 2,613,717 to 2,614,370 _RS14055 Position (kb) 2612 2613 2614Strain fitness (log2 ratio) -3 -2 -1 0 1at 2612.281 kb on - strand, within SGL_RS14040at 2612.301 kb on + strand, within SGL_RS14040at 2612.309 kb on - strand, within SGL_RS14040at 2612.457 kb on - strand, within SGL_RS14040at 2612.558 kb on + strandat 2612.795 kb on - strandat 2612.940 kb on - strandat 2613.057 kb on - strand, within SGL_RS14045at 2613.069 kb on + strand, within SGL_RS14045at 2613.216 kb on + strand, within SGL_RS14045at 2613.224 kb on - strand, within SGL_RS14045at 2613.224 kb on - strand, within SGL_RS14045at 2613.315 kb on - strandat 2613.688 kb on - strandat 2613.811 kb on + strand, within SGL_RS14055at 2613.935 kb on + strand, within SGL_RS14055at 2613.936 kb on + strand, within SGL_RS14055at 2613.959 kb on - strand, within SGL_RS14055at 2614.010 kb on - strand, within SGL_RS14055at 2614.124 kb on + strand, within SGL_RS14055at 2614.169 kb on + strand, within SGL_RS14055at 2614.169 kb on - strand, within SGL_RS14055at 2614.177 kb on - strand, within SGL_RS14055at 2614.206 kb on + strand, within SGL_RS14055at 2614.206 kb on + strand, within SGL_RS14055at 2614.216 kb on - strand, within SGL_RS14055at 2614.250 kb on - strand, within SGL_RS14055

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,612,281 - SGL_RS14040 0.78 -0.1
2,612,301 + SGL_RS14040 0.79 +0.5
2,612,309 - SGL_RS14040 0.80 -0.0
2,612,457 - SGL_RS14040 0.87 +0.6
2,612,558 + +1.4
2,612,795 - -2.4
2,612,940 - -2.0
2,613,057 - SGL_RS14045 0.36 -2.1
2,613,069 + SGL_RS14045 0.39 -2.1
2,613,216 + SGL_RS14045 0.75 -1.5
2,613,224 - SGL_RS14045 0.77 -2.7
2,613,224 - SGL_RS14045 0.77 -3.5
2,613,315 - -3.3
2,613,688 - -0.6
2,613,811 + SGL_RS14055 0.14 -0.0
2,613,935 + SGL_RS14055 0.33 +0.3
2,613,936 + SGL_RS14055 0.33 -0.3
2,613,959 - SGL_RS14055 0.37 -0.2
2,614,010 - SGL_RS14055 0.45 -0.4
2,614,124 + SGL_RS14055 0.62 +0.0
2,614,169 + SGL_RS14055 0.69 +0.1
2,614,169 - SGL_RS14055 0.69 -0.4
2,614,177 - SGL_RS14055 0.70 -0.7
2,614,206 + SGL_RS14055 0.75 -0.2
2,614,206 + SGL_RS14055 0.75 +0.2
2,614,216 - SGL_RS14055 0.76 -0.4
2,614,250 - SGL_RS14055 0.81 -0.3

Or see this region's nucleotide sequence