Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13870

Experiment: Zinc 15 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13860 and SGL_RS13865 are separated by 229 nucleotidesSGL_RS13865 and SGL_RS13870 are separated by 4 nucleotidesSGL_RS13870 and SGL_RS13875 are separated by 64 nucleotidesSGL_RS13875 and SGL_RS13880 are separated by 36 nucleotides SGL_RS13860: SGL_RS13860 - acetolactate synthase small subunit, at 2,575,344 to 2,575,862 _RS13860 SGL_RS13865: SGL_RS13865 - DUF3285 domain-containing protein, at 2,576,092 to 2,576,280 _RS13865 SGL_RS13870: SGL_RS13870 - rRNA maturation RNase YbeY, at 2,576,285 to 2,576,824 _RS13870 SGL_RS13875: SGL_RS13875 - diacylglycerol kinase, at 2,576,889 to 2,577,416 _RS13875 SGL_RS13880: SGL_RS13880 - aminodeoxychorismate/anthranilate synthase component II, at 2,577,453 to 2,578,043 _RS13880 Position (kb) 2576 2577Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2575.604 kb on + strand, within SGL_RS13860at 2576.003 kb on - strandat 2576.178 kb on + strand, within SGL_RS13865at 2576.180 kb on + strand, within SGL_RS13865at 2576.186 kb on - strand, within SGL_RS13865at 2576.188 kb on - strand, within SGL_RS13865at 2576.336 kb on + strandat 2576.369 kb on - strand, within SGL_RS13870at 2576.423 kb on - strand, within SGL_RS13870at 2576.425 kb on - strand, within SGL_RS13870at 2576.532 kb on - strand, within SGL_RS13870at 2576.532 kb on - strand, within SGL_RS13870at 2576.631 kb on + strand, within SGL_RS13870at 2576.687 kb on + strand, within SGL_RS13870at 2576.716 kb on - strand, within SGL_RS13870at 2576.885 kb on - strandat 2577.411 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
remove
2,575,604 + SGL_RS13860 0.50 -2.9
2,576,003 - -0.6
2,576,178 + SGL_RS13865 0.46 +0.0
2,576,180 + SGL_RS13865 0.47 +0.3
2,576,186 - SGL_RS13865 0.50 -0.4
2,576,188 - SGL_RS13865 0.51 +0.0
2,576,336 + -4.2
2,576,369 - SGL_RS13870 0.16 -4.0
2,576,423 - SGL_RS13870 0.26 -5.5
2,576,425 - SGL_RS13870 0.26 -4.1
2,576,532 - SGL_RS13870 0.46 -3.1
2,576,532 - SGL_RS13870 0.46 -4.5
2,576,631 + SGL_RS13870 0.64 -5.1
2,576,687 + SGL_RS13870 0.74 -4.1
2,576,716 - SGL_RS13870 0.80 -4.1
2,576,885 - -4.2
2,577,411 + -0.5

Or see this region's nucleotide sequence