Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13855

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13845 and SGL_RS13850 are separated by 157 nucleotidesSGL_RS13850 and SGL_RS13855 are separated by 93 nucleotidesSGL_RS13855 and SGL_RS13860 are separated by 99 nucleotidesSGL_RS13860 and SGL_RS13865 are separated by 229 nucleotides SGL_RS13845: SGL_RS13845 - NACHT domain-containing protein, at 2,569,772 to 2,573,491 _RS13845 SGL_RS13850: SGL_RS13850 - glutathione S-transferase family protein, at 2,573,649 to 2,574,203 _RS13850 SGL_RS13855: SGL_RS13855 - hypothetical protein, at 2,574,297 to 2,575,244 _RS13855 SGL_RS13860: SGL_RS13860 - acetolactate synthase small subunit, at 2,575,344 to 2,575,862 _RS13860 SGL_RS13865: SGL_RS13865 - DUF3285 domain-containing protein, at 2,576,092 to 2,576,280 _RS13865 Position (kb) 2574 2575 2576Strain fitness (log2 ratio) -3 -2 -1 0 1at 2573.495 kb on - strandat 2573.520 kb on - strandat 2573.623 kb on - strandat 2573.640 kb on + strandat 2573.647 kb on + strandat 2573.687 kb on + strandat 2573.694 kb on + strandat 2573.768 kb on - strand, within SGL_RS13850at 2573.903 kb on - strand, within SGL_RS13850at 2573.906 kb on + strand, within SGL_RS13850at 2573.914 kb on - strand, within SGL_RS13850at 2573.944 kb on + strand, within SGL_RS13850at 2573.944 kb on + strand, within SGL_RS13850at 2573.944 kb on + strand, within SGL_RS13850at 2573.944 kb on + strand, within SGL_RS13850at 2574.019 kb on + strand, within SGL_RS13850at 2574.100 kb on + strand, within SGL_RS13850at 2574.107 kb on + strand, within SGL_RS13850at 2574.143 kb on - strand, within SGL_RS13850at 2574.593 kb on - strand, within SGL_RS13855at 2574.718 kb on + strand, within SGL_RS13855at 2574.763 kb on - strand, within SGL_RS13855at 2575.096 kb on + strand, within SGL_RS13855at 2575.104 kb on - strand, within SGL_RS13855at 2575.248 kb on - strandat 2575.273 kb on + strandat 2575.283 kb on + strandat 2575.604 kb on + strand, within SGL_RS13860at 2576.003 kb on - strandat 2576.178 kb on + strand, within SGL_RS13865at 2576.180 kb on + strand, within SGL_RS13865at 2576.186 kb on - strand, within SGL_RS13865at 2576.188 kb on - strand, within SGL_RS13865

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,573,495 - +0.3
2,573,520 - +0.5
2,573,623 - -0.0
2,573,640 + +0.2
2,573,647 + -0.1
2,573,687 + +0.0
2,573,694 + +0.5
2,573,768 - SGL_RS13850 0.21 +0.3
2,573,903 - SGL_RS13850 0.46 -0.1
2,573,906 + SGL_RS13850 0.46 +0.1
2,573,914 - SGL_RS13850 0.48 -0.4
2,573,944 + SGL_RS13850 0.53 -0.6
2,573,944 + SGL_RS13850 0.53 -0.5
2,573,944 + SGL_RS13850 0.53 +0.3
2,573,944 + SGL_RS13850 0.53 +0.2
2,574,019 + SGL_RS13850 0.67 -0.4
2,574,100 + SGL_RS13850 0.81 -0.3
2,574,107 + SGL_RS13850 0.83 -0.2
2,574,143 - SGL_RS13850 0.89 -0.1
2,574,593 - SGL_RS13855 0.31 -2.2
2,574,718 + SGL_RS13855 0.44 -1.6
2,574,763 - SGL_RS13855 0.49 -2.5
2,575,096 + SGL_RS13855 0.84 -2.2
2,575,104 - SGL_RS13855 0.85 -2.3
2,575,248 - -2.5
2,575,273 + -2.0
2,575,283 + -2.4
2,575,604 + SGL_RS13860 0.50 -2.9
2,576,003 - -0.6
2,576,178 + SGL_RS13865 0.46 +0.0
2,576,180 + SGL_RS13865 0.47 +0.3
2,576,186 - SGL_RS13865 0.50 -0.4
2,576,188 - SGL_RS13865 0.51 +0.0

Or see this region's nucleotide sequence