Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13195

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13185 and SGL_RS13190 overlap by 4 nucleotidesSGL_RS13190 and SGL_RS13195 overlap by 47 nucleotidesSGL_RS13195 and SGL_RS13200 are separated by 222 nucleotides SGL_RS13185: SGL_RS13185 - AI-2E family transporter, at 2,424,371 to 2,425,390 _RS13185 SGL_RS13190: SGL_RS13190 - amino acid ABC transporter substrate-binding protein, at 2,425,387 to 2,426,343 _RS13190 SGL_RS13195: SGL_RS13195 - Ig-like domain-containing protein, at 2,426,297 to 2,427,787 _RS13195 SGL_RS13200: SGL_RS13200 - cytochrome b6, at 2,428,010 to 2,428,678 _RS13200 Position (kb) 2426 2427 2428Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2425.313 kb on + strandat 2425.315 kb on - strandat 2425.368 kb on - strandat 2425.478 kb on + strandat 2425.478 kb on + strandat 2425.486 kb on - strand, within SGL_RS13190at 2425.486 kb on - strand, within SGL_RS13190at 2425.498 kb on - strand, within SGL_RS13190at 2425.510 kb on + strand, within SGL_RS13190at 2425.905 kb on - strand, within SGL_RS13190at 2426.049 kb on + strand, within SGL_RS13190at 2426.068 kb on - strand, within SGL_RS13190at 2426.075 kb on + strand, within SGL_RS13190at 2426.294 kb on + strandat 2426.321 kb on - strandat 2426.357 kb on + strandat 2426.636 kb on + strand, within SGL_RS13195at 2426.818 kb on - strand, within SGL_RS13195at 2426.990 kb on - strand, within SGL_RS13195at 2427.113 kb on + strand, within SGL_RS13195at 2427.147 kb on + strand, within SGL_RS13195at 2427.241 kb on + strand, within SGL_RS13195at 2427.389 kb on + strand, within SGL_RS13195at 2427.396 kb on - strand, within SGL_RS13195at 2427.480 kb on + strand, within SGL_RS13195at 2427.480 kb on + strand, within SGL_RS13195at 2427.695 kb on - strandat 2427.728 kb on - strandat 2427.735 kb on + strandat 2427.788 kb on + strandat 2427.788 kb on + strandat 2427.796 kb on - strandat 2427.917 kb on - strandat 2428.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,425,313 + +0.4
2,425,315 - -0.8
2,425,368 - +1.1
2,425,478 + -0.2
2,425,478 + +0.1
2,425,486 - SGL_RS13190 0.10 +0.2
2,425,486 - SGL_RS13190 0.10 -0.2
2,425,498 - SGL_RS13190 0.12 -0.1
2,425,510 + SGL_RS13190 0.13 +0.1
2,425,905 - SGL_RS13190 0.54 -0.1
2,426,049 + SGL_RS13190 0.69 +0.2
2,426,068 - SGL_RS13190 0.71 -0.2
2,426,075 + SGL_RS13190 0.72 -0.5
2,426,294 + +0.1
2,426,321 - -0.1
2,426,357 + -1.8
2,426,636 + SGL_RS13195 0.23 +0.4
2,426,818 - SGL_RS13195 0.35 -0.5
2,426,990 - SGL_RS13195 0.46 -1.4
2,427,113 + SGL_RS13195 0.55 -1.8
2,427,147 + SGL_RS13195 0.57 -1.8
2,427,241 + SGL_RS13195 0.63 -1.9
2,427,389 + SGL_RS13195 0.73 -1.9
2,427,396 - SGL_RS13195 0.74 -1.1
2,427,480 + SGL_RS13195 0.79 -3.8
2,427,480 + SGL_RS13195 0.79 -1.8
2,427,695 - -1.3
2,427,728 - -1.0
2,427,735 + -2.1
2,427,788 + +0.0
2,427,788 + -0.1
2,427,796 - +0.2
2,427,917 - -5.4
2,428,745 + -2.4

Or see this region's nucleotide sequence