Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12745

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12735 and SGL_RS12740 are separated by 61 nucleotidesSGL_RS12740 and SGL_RS12745 are separated by 385 nucleotidesSGL_RS12745 and SGL_RS12750 are separated by 168 nucleotides SGL_RS12735: SGL_RS12735 - virginiamycin B hydrolase Vgb, at 2,309,413 to 2,310,471 _RS12735 SGL_RS12740: SGL_RS12740 - hypothetical protein, at 2,310,533 to 2,310,991 _RS12740 SGL_RS12745: SGL_RS12745 - glycine cleavage system aminomethyltransferase GcvT, at 2,311,377 to 2,312,495 _RS12745 SGL_RS12750: SGL_RS12750 - molecular chaperone DnaK, at 2,312,664 to 2,314,574 _RS12750 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2310.456 kb on - strandat 2310.497 kb on - strandat 2310.578 kb on - strandat 2310.590 kb on - strand, within SGL_RS12740at 2310.724 kb on + strand, within SGL_RS12740at 2310.780 kb on + strand, within SGL_RS12740at 2310.835 kb on + strand, within SGL_RS12740at 2310.900 kb on - strand, within SGL_RS12740at 2310.902 kb on - strand, within SGL_RS12740at 2310.950 kb on + strandat 2310.958 kb on - strandat 2310.958 kb on - strandat 2311.152 kb on - strandat 2311.276 kb on + strandat 2311.528 kb on - strand, within SGL_RS12745at 2311.528 kb on - strand, within SGL_RS12745at 2311.690 kb on - strand, within SGL_RS12745at 2311.799 kb on - strand, within SGL_RS12745at 2311.810 kb on - strand, within SGL_RS12745at 2311.825 kb on - strand, within SGL_RS12745at 2312.217 kb on + strand, within SGL_RS12745at 2312.224 kb on + strand, within SGL_RS12745at 2312.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,310,456 - +1.1
2,310,497 - +0.4
2,310,578 - -0.0
2,310,590 - SGL_RS12740 0.12 +0.0
2,310,724 + SGL_RS12740 0.42 -0.2
2,310,780 + SGL_RS12740 0.54 +0.4
2,310,835 + SGL_RS12740 0.66 +0.2
2,310,900 - SGL_RS12740 0.80 -0.6
2,310,902 - SGL_RS12740 0.80 +0.8
2,310,950 + +0.2
2,310,958 - +0.6
2,310,958 - -0.4
2,311,152 - -0.5
2,311,276 + -0.2
2,311,528 - SGL_RS12745 0.13 -2.3
2,311,528 - SGL_RS12745 0.13 -2.9
2,311,690 - SGL_RS12745 0.28 -2.7
2,311,799 - SGL_RS12745 0.38 -4.2
2,311,810 - SGL_RS12745 0.39 -1.5
2,311,825 - SGL_RS12745 0.40 -2.4
2,312,217 + SGL_RS12745 0.75 -1.7
2,312,224 + SGL_RS12745 0.76 -3.4
2,312,592 - +0.1

Or see this region's nucleotide sequence