Experiment: Zinc 15 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS19240 and SGL_RS12335 are separated by 76 nucleotides SGL_RS12335 and SGL_RS12340 are separated by 67 nucleotides SGL_RS12340 and SGL_RS12345 are separated by 158 nucleotides
SGL_RS19240: SGL_RS19240 - ABC transporter ATP-binding protein, at 2,227,654 to 2,227,752
_RS19240
SGL_RS12335: SGL_RS12335 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,227,829 to 2,228,377
_RS12335
SGL_RS12340: SGL_RS12340 - hypothetical protein, at 2,228,445 to 2,230,328
_RS12340
SGL_RS12345: SGL_RS12345 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 2,230,487 to 2,231,515
_RS12345
Position (kb)
2228
2229
2230
2231 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2227.547 kb on - strand at 2227.609 kb on - strand at 2227.816 kb on - strand at 2228.171 kb on + strand, within SGL_RS12335 at 2228.205 kb on + strand, within SGL_RS12335 at 2228.213 kb on + strand, within SGL_RS12335 at 2228.213 kb on + strand, within SGL_RS12335 at 2228.218 kb on + strand, within SGL_RS12335 at 2228.218 kb on + strand, within SGL_RS12335 at 2228.221 kb on - strand, within SGL_RS12335 at 2228.243 kb on - strand, within SGL_RS12335 at 2228.247 kb on + strand, within SGL_RS12335 at 2228.271 kb on - strand, within SGL_RS12335 at 2228.431 kb on + strand at 2228.473 kb on - strand at 2228.538 kb on + strand at 2228.715 kb on + strand, within SGL_RS12340 at 2228.755 kb on + strand, within SGL_RS12340 at 2228.815 kb on + strand, within SGL_RS12340 at 2228.857 kb on - strand, within SGL_RS12340 at 2228.952 kb on + strand, within SGL_RS12340 at 2229.190 kb on - strand, within SGL_RS12340 at 2229.216 kb on + strand, within SGL_RS12340 at 2229.386 kb on + strand, within SGL_RS12340 at 2229.446 kb on + strand, within SGL_RS12340 at 2229.456 kb on + strand, within SGL_RS12340 at 2229.489 kb on - strand, within SGL_RS12340 at 2229.546 kb on + strand, within SGL_RS12340 at 2229.605 kb on - strand, within SGL_RS12340 at 2229.841 kb on - strand, within SGL_RS12340 at 2230.040 kb on + strand, within SGL_RS12340 at 2230.048 kb on - strand, within SGL_RS12340 at 2230.137 kb on + strand, within SGL_RS12340 at 2230.137 kb on + strand, within SGL_RS12340 at 2230.137 kb on + strand, within SGL_RS12340 at 2230.147 kb on + strand at 2230.302 kb on + strand at 2230.333 kb on - strand at 2230.395 kb on + strand at 2230.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 15 uM remove 2,227,547 - +0.2 2,227,609 - +0.5 2,227,816 - +0.3 2,228,171 + SGL_RS12335 0.62 -3.1 2,228,205 + SGL_RS12335 0.68 -2.8 2,228,213 + SGL_RS12335 0.70 -3.0 2,228,213 + SGL_RS12335 0.70 -4.3 2,228,218 + SGL_RS12335 0.71 -2.9 2,228,218 + SGL_RS12335 0.71 -3.2 2,228,221 - SGL_RS12335 0.71 -2.4 2,228,243 - SGL_RS12335 0.75 -3.1 2,228,247 + SGL_RS12335 0.76 -4.2 2,228,271 - SGL_RS12335 0.81 -6.2 2,228,431 + -0.4 2,228,473 - -0.2 2,228,538 + -1.9 2,228,715 + SGL_RS12340 0.14 -1.2 2,228,755 + SGL_RS12340 0.16 -1.1 2,228,815 + SGL_RS12340 0.20 -1.5 2,228,857 - SGL_RS12340 0.22 -1.7 2,228,952 + SGL_RS12340 0.27 -1.4 2,229,190 - SGL_RS12340 0.40 -1.8 2,229,216 + SGL_RS12340 0.41 -1.7 2,229,386 + SGL_RS12340 0.50 -2.2 2,229,446 + SGL_RS12340 0.53 -2.1 2,229,456 + SGL_RS12340 0.54 -2.5 2,229,489 - SGL_RS12340 0.55 -1.8 2,229,546 + SGL_RS12340 0.58 -1.7 2,229,605 - SGL_RS12340 0.62 +0.5 2,229,841 - SGL_RS12340 0.74 -1.6 2,230,040 + SGL_RS12340 0.85 -1.0 2,230,048 - SGL_RS12340 0.85 -2.7 2,230,137 + SGL_RS12340 0.90 -1.2 2,230,137 + SGL_RS12340 0.90 -1.6 2,230,137 + SGL_RS12340 0.90 -1.0 2,230,147 + -0.8 2,230,302 + -1.9 2,230,333 - -0.9 2,230,395 + -0.3 2,230,398 - -0.8
Or see this region's nucleotide sequence