Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09845

Experiment: Zinc 15 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS09835 and SGL_RS09840 overlap by 1 nucleotidesSGL_RS09840 and SGL_RS09845 are separated by 67 nucleotidesSGL_RS09845 and SGL_RS09850 are separated by 7 nucleotides SGL_RS09835: SGL_RS09835 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 1,691,493 to 1,692,332 _RS09835 SGL_RS09840: SGL_RS09840 - hypothetical protein, at 1,692,332 to 1,692,559 _RS09840 SGL_RS09845: SGL_RS09845 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 1,692,627 to 1,693,538 _RS09845 SGL_RS09850: SGL_RS09850 - Gfo/Idh/MocA family oxidoreductase, at 1,693,546 to 1,694,661 _RS09850 Position (kb) 1692 1693 1694Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1691.650 kb on - strand, within SGL_RS09835at 1691.793 kb on - strand, within SGL_RS09835at 1691.886 kb on - strand, within SGL_RS09835at 1691.963 kb on + strand, within SGL_RS09835at 1691.971 kb on - strand, within SGL_RS09835at 1691.985 kb on + strand, within SGL_RS09835at 1692.025 kb on - strand, within SGL_RS09835at 1692.051 kb on + strand, within SGL_RS09835at 1692.059 kb on - strand, within SGL_RS09835at 1692.140 kb on + strand, within SGL_RS09835at 1692.140 kb on + strand, within SGL_RS09835at 1692.373 kb on + strand, within SGL_RS09840at 1692.373 kb on + strand, within SGL_RS09840at 1692.413 kb on + strand, within SGL_RS09840at 1692.464 kb on + strand, within SGL_RS09840at 1692.472 kb on - strand, within SGL_RS09840at 1692.551 kb on - strandat 1692.780 kb on - strand, within SGL_RS09845at 1692.842 kb on + strand, within SGL_RS09845at 1692.844 kb on + strand, within SGL_RS09845at 1692.852 kb on - strand, within SGL_RS09845at 1692.865 kb on + strand, within SGL_RS09845at 1692.865 kb on + strand, within SGL_RS09845at 1692.873 kb on - strand, within SGL_RS09845at 1693.077 kb on - strand, within SGL_RS09845at 1693.149 kb on + strand, within SGL_RS09845at 1693.185 kb on + strand, within SGL_RS09845at 1693.194 kb on - strand, within SGL_RS09845at 1693.230 kb on + strand, within SGL_RS09845at 1693.298 kb on - strand, within SGL_RS09845at 1693.578 kb on + strandat 1693.583 kb on + strandat 1693.684 kb on + strand, within SGL_RS09850at 1693.704 kb on - strand, within SGL_RS09850at 1693.825 kb on + strand, within SGL_RS09850at 1693.971 kb on - strand, within SGL_RS09850at 1693.971 kb on - strand, within SGL_RS09850at 1694.015 kb on + strand, within SGL_RS09850at 1694.015 kb on + strand, within SGL_RS09850at 1694.023 kb on - strand, within SGL_RS09850at 1694.023 kb on - strand, within SGL_RS09850at 1694.062 kb on - strand, within SGL_RS09850at 1694.067 kb on - strand, within SGL_RS09850at 1694.098 kb on + strand, within SGL_RS09850at 1694.105 kb on - strand, within SGL_RS09850at 1694.158 kb on - strand, within SGL_RS09850at 1694.209 kb on - strand, within SGL_RS09850at 1694.267 kb on - strand, within SGL_RS09850at 1694.312 kb on - strand, within SGL_RS09850at 1694.331 kb on + strand, within SGL_RS09850at 1694.524 kb on + strand, within SGL_RS09850at 1694.524 kb on + strand, within SGL_RS09850at 1694.532 kb on - strand, within SGL_RS09850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
remove
1,691,650 - SGL_RS09835 0.19 +0.1
1,691,793 - SGL_RS09835 0.36 +0.2
1,691,886 - SGL_RS09835 0.47 +0.5
1,691,963 + SGL_RS09835 0.56 +0.4
1,691,971 - SGL_RS09835 0.57 +0.0
1,691,985 + SGL_RS09835 0.59 -0.2
1,692,025 - SGL_RS09835 0.63 -0.1
1,692,051 + SGL_RS09835 0.66 +0.9
1,692,059 - SGL_RS09835 0.67 -1.4
1,692,140 + SGL_RS09835 0.77 -0.2
1,692,140 + SGL_RS09835 0.77 -0.4
1,692,373 + SGL_RS09840 0.18 +0.2
1,692,373 + SGL_RS09840 0.18 -0.7
1,692,413 + SGL_RS09840 0.36 +0.3
1,692,464 + SGL_RS09840 0.58 +0.7
1,692,472 - SGL_RS09840 0.61 +0.0
1,692,551 - +0.1
1,692,780 - SGL_RS09845 0.17 -4.2
1,692,842 + SGL_RS09845 0.24 -2.4
1,692,844 + SGL_RS09845 0.24 -2.0
1,692,852 - SGL_RS09845 0.25 -5.2
1,692,865 + SGL_RS09845 0.26 -4.7
1,692,865 + SGL_RS09845 0.26 -2.7
1,692,873 - SGL_RS09845 0.27 -4.2
1,693,077 - SGL_RS09845 0.49 -3.3
1,693,149 + SGL_RS09845 0.57 -2.1
1,693,185 + SGL_RS09845 0.61 -4.5
1,693,194 - SGL_RS09845 0.62 -2.7
1,693,230 + SGL_RS09845 0.66 -3.7
1,693,298 - SGL_RS09845 0.74 -1.9
1,693,578 + +1.1
1,693,583 + -0.5
1,693,684 + SGL_RS09850 0.12 -0.1
1,693,704 - SGL_RS09850 0.14 +0.2
1,693,825 + SGL_RS09850 0.25 -0.0
1,693,971 - SGL_RS09850 0.38 -1.1
1,693,971 - SGL_RS09850 0.38 -0.8
1,694,015 + SGL_RS09850 0.42 +0.5
1,694,015 + SGL_RS09850 0.42 -0.6
1,694,023 - SGL_RS09850 0.43 -0.1
1,694,023 - SGL_RS09850 0.43 -0.3
1,694,062 - SGL_RS09850 0.46 +0.1
1,694,067 - SGL_RS09850 0.47 -0.4
1,694,098 + SGL_RS09850 0.49 -0.2
1,694,105 - SGL_RS09850 0.50 -1.1
1,694,158 - SGL_RS09850 0.55 +0.0
1,694,209 - SGL_RS09850 0.59 -0.4
1,694,267 - SGL_RS09850 0.65 -0.1
1,694,312 - SGL_RS09850 0.69 -0.1
1,694,331 + SGL_RS09850 0.70 +0.3
1,694,524 + SGL_RS09850 0.88 -0.6
1,694,524 + SGL_RS09850 0.88 -0.3
1,694,532 - SGL_RS09850 0.88 -0.5

Or see this region's nucleotide sequence