Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07170

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07165 and SGL_RS07170 are separated by 97 nucleotidesSGL_RS07170 and SGL_RS07175 are separated by 93 nucleotides SGL_RS07165: SGL_RS07165 - M23 family metallopeptidase, at 1,137,216 to 1,138,112 _RS07165 SGL_RS07170: SGL_RS07170 - glycine cleavage system protein GcvH, at 1,138,210 to 1,138,608 _RS07170 SGL_RS07175: SGL_RS07175 - NFACT family protein, at 1,138,702 to 1,140,474 _RS07175 Position (kb) 1138 1139Strain fitness (log2 ratio) -2 -1 0 1at 1137.347 kb on + strand, within SGL_RS07165at 1137.347 kb on + strand, within SGL_RS07165at 1137.447 kb on + strand, within SGL_RS07165at 1137.485 kb on + strand, within SGL_RS07165at 1138.309 kb on + strand, within SGL_RS07170at 1138.385 kb on - strand, within SGL_RS07170at 1138.414 kb on + strand, within SGL_RS07170at 1138.578 kb on + strandat 1138.589 kb on + strandat 1138.623 kb on + strandat 1138.623 kb on + strandat 1138.723 kb on + strandat 1138.746 kb on + strandat 1138.804 kb on + strandat 1138.877 kb on + strandat 1138.947 kb on + strand, within SGL_RS07175at 1138.947 kb on + strand, within SGL_RS07175at 1138.955 kb on - strand, within SGL_RS07175at 1139.046 kb on - strand, within SGL_RS07175at 1139.138 kb on - strand, within SGL_RS07175at 1139.192 kb on - strand, within SGL_RS07175at 1139.317 kb on - strand, within SGL_RS07175at 1139.477 kb on - strand, within SGL_RS07175at 1139.508 kb on + strand, within SGL_RS07175

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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1,137,347 + SGL_RS07165 0.15 -0.4
1,137,347 + SGL_RS07165 0.15 -0.4
1,137,447 + SGL_RS07165 0.26 +0.1
1,137,485 + SGL_RS07165 0.30 +0.5
1,138,309 + SGL_RS07170 0.25 -2.7
1,138,385 - SGL_RS07170 0.44 -1.1
1,138,414 + SGL_RS07170 0.51 -1.9
1,138,578 + +0.3
1,138,589 + +0.1
1,138,623 + +0.3
1,138,623 + -0.1
1,138,723 + -0.4
1,138,746 + +0.1
1,138,804 + -0.7
1,138,877 + -0.1
1,138,947 + SGL_RS07175 0.14 +0.0
1,138,947 + SGL_RS07175 0.14 +0.0
1,138,955 - SGL_RS07175 0.14 +0.0
1,139,046 - SGL_RS07175 0.19 +0.5
1,139,138 - SGL_RS07175 0.25 -0.1
1,139,192 - SGL_RS07175 0.28 -0.1
1,139,317 - SGL_RS07175 0.35 -0.2
1,139,477 - SGL_RS07175 0.44 -0.3
1,139,508 + SGL_RS07175 0.45 -0.5

Or see this region's nucleotide sequence