Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06440

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06435 and SGL_RS06440 are separated by 89 nucleotidesSGL_RS06440 and SGL_RS06445 are separated by 73 nucleotidesSGL_RS06445 and SGL_RS06450 are separated by 111 nucleotides SGL_RS06435: SGL_RS06435 - cobalt-precorrin-5B (C(1))-methyltransferase CbiD, at 976,706 to 977,842 _RS06435 SGL_RS06440: SGL_RS06440 - NAD-dependent epimerase/dehydratase family protein, at 977,932 to 978,867 _RS06440 SGL_RS06445: SGL_RS06445 - DUF3782 domain-containing protein, at 978,941 to 979,573 _RS06445 SGL_RS06450: SGL_RS06450 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 979,685 to 980,170 _RS06450 Position (kb) 977 978 979Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 977.838 kb on - strandat 977.878 kb on + strandat 978.146 kb on + strand, within SGL_RS06440at 978.180 kb on + strand, within SGL_RS06440at 978.320 kb on + strand, within SGL_RS06440at 978.389 kb on - strand, within SGL_RS06440at 978.586 kb on + strand, within SGL_RS06440at 978.586 kb on + strand, within SGL_RS06440at 978.594 kb on - strand, within SGL_RS06440at 978.599 kb on - strand, within SGL_RS06440at 979.196 kb on + strand, within SGL_RS06445at 979.320 kb on - strand, within SGL_RS06445at 979.501 kb on - strand, within SGL_RS06445

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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977,838 - -2.6
977,878 + -0.2
978,146 + SGL_RS06440 0.23 -4.9
978,180 + SGL_RS06440 0.26 -4.4
978,320 + SGL_RS06440 0.41 -4.9
978,389 - SGL_RS06440 0.49 -5.5
978,586 + SGL_RS06440 0.70 -5.2
978,586 + SGL_RS06440 0.70 -5.4
978,594 - SGL_RS06440 0.71 -4.0
978,599 - SGL_RS06440 0.71 -3.4
979,196 + SGL_RS06445 0.40 -4.6
979,320 - SGL_RS06445 0.60 -2.6
979,501 - SGL_RS06445 0.88 -4.3

Or see this region's nucleotide sequence