Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02280

Experiment: Zinc 15 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS02275 and SGL_RS02280 are separated by 645 nucleotidesSGL_RS02280 and SGL_RS02285 are separated by 83 nucleotidesSGL_RS02285 and SGL_RS02290 are separated by 9 nucleotides SGL_RS02275: SGL_RS02275 - SPFH domain-containing protein, at 91,517 to 92,482 _RS02275 SGL_RS02280: SGL_RS02280 - Rne/Rng family ribonuclease, at 93,128 to 95,152 _RS02280 SGL_RS02285: SGL_RS02285 - ribonuclease HII, at 95,236 to 95,808 _RS02285 SGL_RS02290: SGL_RS02290 - 8-oxo-dGTP diphosphatase MutT, at 95,818 to 96,228 _RS02290 Position (kb) 93 94 95 96Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 92.354 kb on + strand, within SGL_RS02275at 92.408 kb on + strandat 92.416 kb on - strandat 92.444 kb on - strandat 92.452 kb on + strandat 92.489 kb on + strandat 92.499 kb on - strandat 92.523 kb on + strandat 92.609 kb on + strandat 92.705 kb on - strandat 92.881 kb on + strandat 92.995 kb on + strandat 93.038 kb on + strandat 94.499 kb on + strand, within SGL_RS02280at 94.704 kb on - strand, within SGL_RS02280at 94.723 kb on + strand, within SGL_RS02280at 94.859 kb on + strand, within SGL_RS02280at 94.881 kb on - strand, within SGL_RS02280at 94.907 kb on - strand, within SGL_RS02280at 94.926 kb on - strand, within SGL_RS02280at 95.153 kb on + strandat 95.339 kb on + strand, within SGL_RS02285at 95.346 kb on + strand, within SGL_RS02285at 95.380 kb on + strand, within SGL_RS02285at 95.385 kb on + strand, within SGL_RS02285at 95.397 kb on + strand, within SGL_RS02285at 95.405 kb on - strand, within SGL_RS02285at 95.407 kb on + strand, within SGL_RS02285at 95.407 kb on + strand, within SGL_RS02285at 95.413 kb on + strand, within SGL_RS02285at 95.452 kb on - strand, within SGL_RS02285at 95.462 kb on - strand, within SGL_RS02285at 95.464 kb on + strand, within SGL_RS02285at 95.473 kb on + strand, within SGL_RS02285at 95.556 kb on - strand, within SGL_RS02285at 95.697 kb on - strand, within SGL_RS02285at 95.707 kb on - strand, within SGL_RS02285at 95.753 kb on - strandat 95.766 kb on - strandat 95.937 kb on - strand, within SGL_RS02290at 95.938 kb on - strand, within SGL_RS02290at 95.975 kb on + strand, within SGL_RS02290at 96.000 kb on + strand, within SGL_RS02290at 96.008 kb on - strand, within SGL_RS02290at 96.010 kb on + strand, within SGL_RS02290at 96.078 kb on - strand, within SGL_RS02290at 96.091 kb on - strand, within SGL_RS02290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
remove
92,354 + SGL_RS02275 0.87 +1.4
92,408 + -0.2
92,416 - -0.0
92,444 - +0.2
92,452 + +0.5
92,489 + -0.1
92,499 - +0.2
92,523 + -0.7
92,609 + -2.3
92,705 - -4.5
92,881 + -3.2
92,995 + -2.7
93,038 + -2.1
94,499 + SGL_RS02280 0.68 -2.6
94,704 - SGL_RS02280 0.78 -1.9
94,723 + SGL_RS02280 0.79 -1.6
94,859 + SGL_RS02280 0.85 -1.6
94,881 - SGL_RS02280 0.87 -1.0
94,907 - SGL_RS02280 0.88 -1.4
94,926 - SGL_RS02280 0.89 -2.4
95,153 + -0.8
95,339 + SGL_RS02285 0.18 -0.1
95,346 + SGL_RS02285 0.19 -0.0
95,380 + SGL_RS02285 0.25 +0.2
95,385 + SGL_RS02285 0.26 -0.3
95,397 + SGL_RS02285 0.28 +0.1
95,405 - SGL_RS02285 0.29 +0.1
95,407 + SGL_RS02285 0.30 -0.0
95,407 + SGL_RS02285 0.30 +1.1
95,413 + SGL_RS02285 0.31 +0.1
95,452 - SGL_RS02285 0.38 +0.2
95,462 - SGL_RS02285 0.39 +0.2
95,464 + SGL_RS02285 0.40 +0.1
95,473 + SGL_RS02285 0.41 +0.9
95,556 - SGL_RS02285 0.56 +0.2
95,697 - SGL_RS02285 0.80 +0.4
95,707 - SGL_RS02285 0.82 +0.2
95,753 - -0.6
95,766 - +0.4
95,937 - SGL_RS02290 0.29 -0.3
95,938 - SGL_RS02290 0.29 -0.3
95,975 + SGL_RS02290 0.38 -0.4
96,000 + SGL_RS02290 0.44 -0.5
96,008 - SGL_RS02290 0.46 -0.3
96,010 + SGL_RS02290 0.47 +0.0
96,078 - SGL_RS02290 0.63 -0.2
96,091 - SGL_RS02290 0.66 -0.7

Or see this region's nucleotide sequence