Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17400

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17395 and SGL_RS17400 are separated by 99 nucleotidesSGL_RS17400 and SGL_RS17405 are separated by 146 nucleotides SGL_RS17395: SGL_RS17395 - helix-turn-helix domain-containing protein, at 3,362,057 to 3,363,166 _RS17395 SGL_RS17400: SGL_RS17400 - mannose-1-phosphate guanyltransferase, at 3,363,266 to 3,365,797 _RS17400 SGL_RS17405: SGL_RS17405 - L-2-hydroxyglutarate oxidase, at 3,365,944 to 3,367,137 _RS17405 Position (kb) 3363 3364 3365 3366Strain fitness (log2 ratio) -1 0 1at 3362.336 kb on - strand, within SGL_RS17395at 3362.420 kb on + strand, within SGL_RS17395at 3362.428 kb on - strand, within SGL_RS17395at 3362.428 kb on - strand, within SGL_RS17395at 3362.433 kb on - strand, within SGL_RS17395at 3362.508 kb on + strand, within SGL_RS17395at 3362.538 kb on + strand, within SGL_RS17395at 3362.546 kb on - strand, within SGL_RS17395at 3362.686 kb on - strand, within SGL_RS17395at 3362.825 kb on - strand, within SGL_RS17395at 3363.197 kb on + strandat 3363.245 kb on + strandat 3363.253 kb on - strandat 3363.264 kb on - strandat 3363.312 kb on + strandat 3363.380 kb on + strandat 3363.388 kb on + strandat 3363.543 kb on + strand, within SGL_RS17400at 3363.551 kb on - strand, within SGL_RS17400at 3363.657 kb on + strand, within SGL_RS17400at 3363.706 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.746 kb on + strand, within SGL_RS17400at 3363.960 kb on + strand, within SGL_RS17400at 3364.053 kb on - strand, within SGL_RS17400at 3364.104 kb on + strand, within SGL_RS17400at 3364.112 kb on - strand, within SGL_RS17400at 3364.192 kb on + strand, within SGL_RS17400at 3364.200 kb on + strand, within SGL_RS17400at 3364.378 kb on + strand, within SGL_RS17400at 3364.540 kb on + strand, within SGL_RS17400at 3364.657 kb on + strand, within SGL_RS17400at 3364.831 kb on - strand, within SGL_RS17400at 3364.839 kb on - strand, within SGL_RS17400at 3365.019 kb on - strand, within SGL_RS17400at 3365.028 kb on - strand, within SGL_RS17400at 3365.108 kb on + strand, within SGL_RS17400at 3365.116 kb on - strand, within SGL_RS17400at 3365.116 kb on - strand, within SGL_RS17400at 3365.435 kb on + strand, within SGL_RS17400at 3365.532 kb on - strand, within SGL_RS17400at 3365.622 kb on + strandat 3365.622 kb on + strandat 3365.643 kb on + strandat 3365.707 kb on + strandat 3365.722 kb on + strandat 3365.735 kb on - strandat 3365.788 kb on - strandat 3365.799 kb on + strandat 3365.947 kb on - strandat 3366.089 kb on + strand, within SGL_RS17405at 3366.166 kb on + strand, within SGL_RS17405at 3366.178 kb on - strand, within SGL_RS17405at 3366.311 kb on + strand, within SGL_RS17405at 3366.506 kb on + strand, within SGL_RS17405

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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3,362,336 - SGL_RS17395 0.25 +0.2
3,362,420 + SGL_RS17395 0.33 -0.0
3,362,428 - SGL_RS17395 0.33 -0.1
3,362,428 - SGL_RS17395 0.33 +0.6
3,362,433 - SGL_RS17395 0.34 +0.1
3,362,508 + SGL_RS17395 0.41 +0.2
3,362,538 + SGL_RS17395 0.43 +0.2
3,362,546 - SGL_RS17395 0.44 -0.3
3,362,686 - SGL_RS17395 0.57 +0.1
3,362,825 - SGL_RS17395 0.69 -0.2
3,363,197 + +0.2
3,363,245 + -0.2
3,363,253 - +0.2
3,363,264 - +0.2
3,363,312 + -1.2
3,363,380 + -0.7
3,363,388 + -1.0
3,363,543 + SGL_RS17400 0.11 +0.0
3,363,551 - SGL_RS17400 0.11 -1.0
3,363,657 + SGL_RS17400 0.15 -1.4
3,363,706 - SGL_RS17400 0.17 -0.5
3,363,742 - SGL_RS17400 0.19 -1.1
3,363,742 - SGL_RS17400 0.19 -0.6
3,363,742 - SGL_RS17400 0.19 -1.2
3,363,742 - SGL_RS17400 0.19 -1.0
3,363,746 + SGL_RS17400 0.19 -1.1
3,363,960 + SGL_RS17400 0.27 -1.4
3,364,053 - SGL_RS17400 0.31 -1.3
3,364,104 + SGL_RS17400 0.33 -0.7
3,364,112 - SGL_RS17400 0.33 -1.3
3,364,192 + SGL_RS17400 0.37 -1.2
3,364,200 + SGL_RS17400 0.37 -1.1
3,364,378 + SGL_RS17400 0.44 -1.1
3,364,540 + SGL_RS17400 0.50 -0.6
3,364,657 + SGL_RS17400 0.55 -1.3
3,364,831 - SGL_RS17400 0.62 -0.7
3,364,839 - SGL_RS17400 0.62 -0.7
3,365,019 - SGL_RS17400 0.69 -0.8
3,365,028 - SGL_RS17400 0.70 -1.1
3,365,108 + SGL_RS17400 0.73 -0.3
3,365,116 - SGL_RS17400 0.73 -0.3
3,365,116 - SGL_RS17400 0.73 -1.0
3,365,435 + SGL_RS17400 0.86 -0.3
3,365,532 - SGL_RS17400 0.89 -0.5
3,365,622 + -0.7
3,365,622 + -1.2
3,365,643 + -0.6
3,365,707 + -1.3
3,365,722 + +1.2
3,365,735 - -0.9
3,365,788 - -1.5
3,365,799 + -0.4
3,365,947 - +0.0
3,366,089 + SGL_RS17405 0.12 -0.2
3,366,166 + SGL_RS17405 0.19 -0.3
3,366,178 - SGL_RS17405 0.20 -0.6
3,366,311 + SGL_RS17405 0.31 +0.1
3,366,506 + SGL_RS17405 0.47 -0.3

Or see this region's nucleotide sequence