Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16350

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16340 and SGL_RS16345 are separated by 124 nucleotidesSGL_RS16345 and SGL_RS16350 overlap by 1 nucleotidesSGL_RS16350 and SGL_RS16355 are separated by 80 nucleotidesSGL_RS16355 and SGL_RS16360 are separated by 359 nucleotides SGL_RS16340: SGL_RS16340 - lysylphosphatidylglycerol synthase domain-containing protein, at 3,114,479 to 3,115,447 _RS16340 SGL_RS16345: SGL_RS16345 - ferredoxin, at 3,115,572 to 3,115,973 _RS16345 SGL_RS16350: SGL_RS16350 - DUF1257 domain-containing protein, at 3,115,973 to 3,116,359 _RS16350 SGL_RS16355: SGL_RS16355 - DUF2997 domain-containing protein, at 3,116,440 to 3,116,682 _RS16355 SGL_RS16360: SGL_RS16360 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,117,042 to 3,118,091 _RS16360 Position (kb) 3115 3116 3117Strain fitness (log2 ratio) -2 -1 0 1at 3115.053 kb on - strand, within SGL_RS16340at 3115.158 kb on + strand, within SGL_RS16340at 3115.161 kb on - strand, within SGL_RS16340at 3115.161 kb on - strand, within SGL_RS16340at 3115.238 kb on + strand, within SGL_RS16340at 3115.238 kb on - strand, within SGL_RS16340at 3115.287 kb on + strand, within SGL_RS16340at 3115.348 kb on + strand, within SGL_RS16340at 3115.355 kb on + strandat 3115.363 kb on - strandat 3115.363 kb on - strandat 3115.700 kb on - strand, within SGL_RS16345at 3115.740 kb on + strand, within SGL_RS16345at 3115.909 kb on + strand, within SGL_RS16345at 3116.053 kb on - strand, within SGL_RS16350at 3116.090 kb on - strand, within SGL_RS16350at 3116.140 kb on + strand, within SGL_RS16350at 3116.141 kb on + strand, within SGL_RS16350at 3116.193 kb on - strand, within SGL_RS16350at 3116.247 kb on - strand, within SGL_RS16350at 3116.252 kb on - strand, within SGL_RS16350at 3116.279 kb on + strand, within SGL_RS16350at 3116.321 kb on - strandat 3116.476 kb on - strand, within SGL_RS16355at 3116.548 kb on + strand, within SGL_RS16355at 3116.628 kb on + strand, within SGL_RS16355at 3116.654 kb on - strand, within SGL_RS16355at 3116.850 kb on + strandat 3116.852 kb on + strandat 3116.889 kb on + strandat 3116.942 kb on + strandat 3116.950 kb on - strandat 3117.134 kb on - strandat 3117.260 kb on - strand, within SGL_RS16360

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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3,115,053 - SGL_RS16340 0.59 -0.1
3,115,158 + SGL_RS16340 0.70 -0.3
3,115,161 - SGL_RS16340 0.70 +0.2
3,115,161 - SGL_RS16340 0.70 +0.4
3,115,238 + SGL_RS16340 0.78 +0.3
3,115,238 - SGL_RS16340 0.78 -0.2
3,115,287 + SGL_RS16340 0.83 +0.2
3,115,348 + SGL_RS16340 0.90 -0.0
3,115,355 + +0.2
3,115,363 - +0.1
3,115,363 - +0.1
3,115,700 - SGL_RS16345 0.32 -0.4
3,115,740 + SGL_RS16345 0.42 -0.2
3,115,909 + SGL_RS16345 0.84 -0.0
3,116,053 - SGL_RS16350 0.21 -0.6
3,116,090 - SGL_RS16350 0.30 -0.4
3,116,140 + SGL_RS16350 0.43 -0.7
3,116,141 + SGL_RS16350 0.43 +0.0
3,116,193 - SGL_RS16350 0.57 -0.2
3,116,247 - SGL_RS16350 0.71 -0.2
3,116,252 - SGL_RS16350 0.72 -0.2
3,116,279 + SGL_RS16350 0.79 -0.5
3,116,321 - -0.4
3,116,476 - SGL_RS16355 0.15 -0.5
3,116,548 + SGL_RS16355 0.44 -0.0
3,116,628 + SGL_RS16355 0.77 -0.1
3,116,654 - SGL_RS16355 0.88 -0.1
3,116,850 + +0.3
3,116,852 + -0.0
3,116,889 + -0.1
3,116,942 + +0.6
3,116,950 - +0.1
3,117,134 - -2.3
3,117,260 - SGL_RS16360 0.21 -1.9

Or see this region's nucleotide sequence