Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15695

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15685 and SGL_RS15695 are separated by 488 nucleotidesSGL_RS15695 and SGL_RS15700 are separated by 274 nucleotides SGL_RS15685: SGL_RS15685 - IS701 family transposase, at 2,968,175 to 2,969,188 _RS15685 SGL_RS15695: SGL_RS15695 - ammonium transporter, at 2,969,677 to 2,971,200 _RS15695 SGL_RS15700: SGL_RS15700 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 2,971,475 to 2,972,167 _RS15700 Position (kb) 2969 2970 2971 2972Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2969.443 kb on + strandat 2969.494 kb on - strandat 2969.749 kb on - strandat 2969.808 kb on - strandat 2969.810 kb on + strandat 2969.856 kb on - strand, within SGL_RS15695at 2969.896 kb on + strand, within SGL_RS15695at 2969.963 kb on - strand, within SGL_RS15695at 2969.988 kb on + strand, within SGL_RS15695at 2970.044 kb on - strand, within SGL_RS15695at 2970.141 kb on + strand, within SGL_RS15695at 2970.144 kb on - strand, within SGL_RS15695at 2970.200 kb on - strand, within SGL_RS15695at 2970.201 kb on - strand, within SGL_RS15695at 2970.239 kb on - strand, within SGL_RS15695at 2970.393 kb on + strand, within SGL_RS15695at 2970.485 kb on + strand, within SGL_RS15695at 2970.534 kb on + strand, within SGL_RS15695at 2970.555 kb on - strand, within SGL_RS15695at 2970.652 kb on + strand, within SGL_RS15695at 2970.693 kb on - strand, within SGL_RS15695at 2970.771 kb on - strand, within SGL_RS15695at 2970.876 kb on - strand, within SGL_RS15695at 2970.932 kb on + strand, within SGL_RS15695at 2970.933 kb on + strand, within SGL_RS15695at 2970.933 kb on + strand, within SGL_RS15695at 2970.940 kb on - strand, within SGL_RS15695at 2971.582 kb on + strand, within SGL_RS15700at 2971.631 kb on + strand, within SGL_RS15700at 2971.643 kb on + strand, within SGL_RS15700at 2971.676 kb on + strand, within SGL_RS15700at 2971.683 kb on + strand, within SGL_RS15700at 2971.701 kb on + strand, within SGL_RS15700at 2971.811 kb on - strand, within SGL_RS15700at 2971.839 kb on + strand, within SGL_RS15700at 2971.917 kb on - strand, within SGL_RS15700at 2971.977 kb on - strand, within SGL_RS15700at 2972.008 kb on - strand, within SGL_RS15700at 2972.046 kb on - strand, within SGL_RS15700at 2972.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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2,969,443 + +0.3
2,969,494 - +0.1
2,969,749 - +0.2
2,969,808 - -0.8
2,969,810 + -1.4
2,969,856 - SGL_RS15695 0.12 -1.0
2,969,896 + SGL_RS15695 0.14 -0.6
2,969,963 - SGL_RS15695 0.19 -1.9
2,969,988 + SGL_RS15695 0.20 -1.3
2,970,044 - SGL_RS15695 0.24 -1.3
2,970,141 + SGL_RS15695 0.30 -2.0
2,970,144 - SGL_RS15695 0.31 -0.9
2,970,200 - SGL_RS15695 0.34 -0.9
2,970,201 - SGL_RS15695 0.34 -0.3
2,970,239 - SGL_RS15695 0.37 -2.0
2,970,393 + SGL_RS15695 0.47 -1.0
2,970,485 + SGL_RS15695 0.53 -0.6
2,970,534 + SGL_RS15695 0.56 -1.3
2,970,555 - SGL_RS15695 0.58 -1.0
2,970,652 + SGL_RS15695 0.64 +1.1
2,970,693 - SGL_RS15695 0.67 -0.6
2,970,771 - SGL_RS15695 0.72 -1.1
2,970,876 - SGL_RS15695 0.79 -2.1
2,970,932 + SGL_RS15695 0.82 -2.9
2,970,933 + SGL_RS15695 0.82 -2.0
2,970,933 + SGL_RS15695 0.82 -0.2
2,970,940 - SGL_RS15695 0.83 -1.2
2,971,582 + SGL_RS15700 0.15 -3.2
2,971,631 + SGL_RS15700 0.23 -2.5
2,971,643 + SGL_RS15700 0.24 -3.5
2,971,676 + SGL_RS15700 0.29 -3.1
2,971,683 + SGL_RS15700 0.30 -2.7
2,971,701 + SGL_RS15700 0.33 -4.0
2,971,811 - SGL_RS15700 0.48 -4.6
2,971,839 + SGL_RS15700 0.53 -2.3
2,971,917 - SGL_RS15700 0.64 -3.2
2,971,977 - SGL_RS15700 0.72 -2.9
2,972,008 - SGL_RS15700 0.77 -3.6
2,972,046 - SGL_RS15700 0.82 -2.2
2,972,114 - -0.5

Or see this region's nucleotide sequence