Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14510

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14505 and SGL_RS14510 are separated by 125 nucleotidesSGL_RS14510 and SGL_RS14515 are separated by 135 nucleotidesSGL_RS14515 and SGL_RS14520 overlap by 4 nucleotidesSGL_RS14520 and SGL_RS14525 are separated by 102 nucleotides SGL_RS14505: SGL_RS14505 - glutamate-5-semialdehyde dehydrogenase, at 2,709,084 to 2,710,385 _RS14505 SGL_RS14510: SGL_RS14510 - DUF3177 family protein, at 2,710,511 to 2,711,107 _RS14510 SGL_RS14515: SGL_RS14515 - type II toxin-antitoxin system HicA family toxin, at 2,711,243 to 2,711,422 _RS14515 SGL_RS14520: SGL_RS14520 - type II toxin-antitoxin system HicB family antitoxin, at 2,711,419 to 2,711,637 _RS14520 SGL_RS14525: SGL_RS14525 - reverse transcriptase domain-containing protein, at 2,711,740 to 2,713,305 _RS14525 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -2 -1 0 1at 2709.540 kb on + strand, within SGL_RS14505at 2709.554 kb on - strand, within SGL_RS14505at 2709.649 kb on + strand, within SGL_RS14505at 2709.671 kb on - strand, within SGL_RS14505at 2709.745 kb on - strand, within SGL_RS14505at 2710.087 kb on - strand, within SGL_RS14505at 2710.178 kb on - strand, within SGL_RS14505at 2710.380 kb on + strandat 2710.439 kb on - strandat 2710.489 kb on + strandat 2710.497 kb on - strandat 2710.650 kb on + strand, within SGL_RS14510at 2710.652 kb on + strand, within SGL_RS14510at 2710.660 kb on - strand, within SGL_RS14510at 2710.722 kb on - strand, within SGL_RS14510at 2711.162 kb on + strandat 2711.455 kb on + strand, within SGL_RS14520at 2711.505 kb on - strand, within SGL_RS14520at 2712.000 kb on - strand, within SGL_RS14525

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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2,709,540 + SGL_RS14505 0.35 -0.6
2,709,554 - SGL_RS14505 0.36 -0.6
2,709,649 + SGL_RS14505 0.43 -0.2
2,709,671 - SGL_RS14505 0.45 -0.1
2,709,745 - SGL_RS14505 0.51 +0.8
2,710,087 - SGL_RS14505 0.77 +0.5
2,710,178 - SGL_RS14505 0.84 -0.6
2,710,380 + +0.3
2,710,439 - +0.4
2,710,489 + +0.4
2,710,497 - -0.1
2,710,650 + SGL_RS14510 0.23 -2.2
2,710,652 + SGL_RS14510 0.24 -1.8
2,710,660 - SGL_RS14510 0.25 -2.2
2,710,722 - SGL_RS14510 0.35 -2.6
2,711,162 + -1.2
2,711,455 + SGL_RS14520 0.16 +0.5
2,711,505 - SGL_RS14520 0.39 -0.1
2,712,000 - SGL_RS14525 0.17 +0.5

Or see this region's nucleotide sequence