Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14300

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14295 and SGL_RS14300 are separated by 214 nucleotidesSGL_RS14300 and SGL_RS14305 are separated by 81 nucleotidesSGL_RS14305 and SGL_RS14310 overlap by 46 nucleotides SGL_RS14295: SGL_RS14295 - mechanosensitive ion channel, at 2,660,854 to 2,661,744 _RS14295 SGL_RS14300: SGL_RS14300 - HAMP domain-containing sensor histidine kinase, at 2,661,959 to 2,663,284 _RS14300 SGL_RS14305: SGL_RS14305 - DUF3593 domain-containing protein, at 2,663,366 to 2,663,731 _RS14305 SGL_RS14310: SGL_RS14310 - DUF2499 domain-containing protein, at 2,663,686 to 2,664,000 _RS14310 Position (kb) 2661 2662 2663 2664Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2661.969 kb on - strandat 2661.981 kb on - strandat 2662.094 kb on - strand, within SGL_RS14300at 2662.106 kb on - strand, within SGL_RS14300at 2662.141 kb on - strand, within SGL_RS14300at 2662.181 kb on - strand, within SGL_RS14300at 2662.302 kb on - strand, within SGL_RS14300at 2662.373 kb on + strand, within SGL_RS14300at 2662.373 kb on + strand, within SGL_RS14300at 2662.381 kb on - strand, within SGL_RS14300at 2662.381 kb on - strand, within SGL_RS14300at 2662.381 kb on - strand, within SGL_RS14300at 2662.627 kb on - strand, within SGL_RS14300at 2662.644 kb on + strand, within SGL_RS14300at 2662.652 kb on - strand, within SGL_RS14300at 2662.657 kb on - strand, within SGL_RS14300at 2662.680 kb on + strand, within SGL_RS14300at 2662.734 kb on - strand, within SGL_RS14300at 2662.947 kb on + strand, within SGL_RS14300at 2662.954 kb on - strand, within SGL_RS14300at 2662.974 kb on + strand, within SGL_RS14300at 2662.994 kb on - strand, within SGL_RS14300at 2662.998 kb on + strand, within SGL_RS14300at 2663.005 kb on + strand, within SGL_RS14300at 2663.008 kb on + strand, within SGL_RS14300at 2663.028 kb on - strand, within SGL_RS14300at 2663.081 kb on + strand, within SGL_RS14300at 2663.091 kb on - strand, within SGL_RS14300at 2663.195 kb on - strandat 2663.239 kb on - strandat 2663.320 kb on + strandat 2663.473 kb on - strand, within SGL_RS14305at 2663.522 kb on - strand, within SGL_RS14305at 2663.770 kb on + strand, within SGL_RS14310at 2663.770 kb on + strand, within SGL_RS14310at 2663.784 kb on - strand, within SGL_RS14310at 2663.787 kb on + strand, within SGL_RS14310at 2663.844 kb on - strand, within SGL_RS14310at 2663.870 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.878 kb on - strand, within SGL_RS14310at 2663.878 kb on - strand, within SGL_RS14310at 2663.893 kb on + strand, within SGL_RS14310at 2663.901 kb on - strand, within SGL_RS14310at 2663.901 kb on - strand, within SGL_RS14310at 2663.909 kb on + strand, within SGL_RS14310at 2663.921 kb on - strand, within SGL_RS14310at 2664.068 kb on + strandat 2664.076 kb on - strandat 2664.111 kb on + strandat 2664.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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2,661,969 - -4.8
2,661,981 - -4.7
2,662,094 - SGL_RS14300 0.10 -7.7
2,662,106 - SGL_RS14300 0.11 -6.7
2,662,141 - SGL_RS14300 0.14 -6.6
2,662,181 - SGL_RS14300 0.17 -6.7
2,662,302 - SGL_RS14300 0.26 -6.5
2,662,373 + SGL_RS14300 0.31 -7.7
2,662,373 + SGL_RS14300 0.31 -3.8
2,662,381 - SGL_RS14300 0.32 -6.8
2,662,381 - SGL_RS14300 0.32 -3.6
2,662,381 - SGL_RS14300 0.32 -4.1
2,662,627 - SGL_RS14300 0.50 -7.1
2,662,644 + SGL_RS14300 0.52 -6.1
2,662,652 - SGL_RS14300 0.52 -5.4
2,662,657 - SGL_RS14300 0.53 -3.8
2,662,680 + SGL_RS14300 0.54 -6.7
2,662,734 - SGL_RS14300 0.58 -7.8
2,662,947 + SGL_RS14300 0.75 -6.2
2,662,954 - SGL_RS14300 0.75 -2.8
2,662,974 + SGL_RS14300 0.77 -4.8
2,662,994 - SGL_RS14300 0.78 -8.5
2,662,998 + SGL_RS14300 0.78 -6.9
2,663,005 + SGL_RS14300 0.79 -7.6
2,663,008 + SGL_RS14300 0.79 -6.5
2,663,028 - SGL_RS14300 0.81 -8.4
2,663,081 + SGL_RS14300 0.85 -6.9
2,663,091 - SGL_RS14300 0.85 -6.9
2,663,195 - -7.8
2,663,239 - -7.0
2,663,320 + +0.1
2,663,473 - SGL_RS14305 0.29 -0.0
2,663,522 - SGL_RS14305 0.43 -0.1
2,663,770 + SGL_RS14310 0.27 -0.4
2,663,770 + SGL_RS14310 0.27 +0.1
2,663,784 - SGL_RS14310 0.31 -0.1
2,663,787 + SGL_RS14310 0.32 -0.2
2,663,844 - SGL_RS14310 0.50 +0.0
2,663,870 + SGL_RS14310 0.58 -0.0
2,663,875 + SGL_RS14310 0.60 -0.2
2,663,875 + SGL_RS14310 0.60 -0.1
2,663,875 + SGL_RS14310 0.60 -0.2
2,663,875 + SGL_RS14310 0.60 +0.1
2,663,878 - SGL_RS14310 0.61 -0.4
2,663,878 - SGL_RS14310 0.61 +0.5
2,663,893 + SGL_RS14310 0.66 +0.1
2,663,901 - SGL_RS14310 0.68 -0.1
2,663,901 - SGL_RS14310 0.68 +0.0
2,663,909 + SGL_RS14310 0.71 +0.5
2,663,921 - SGL_RS14310 0.75 +0.5
2,664,068 + +0.0
2,664,076 - +0.3
2,664,111 + -0.4
2,664,249 - -0.5

Or see this region's nucleotide sequence