Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12485

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12475 and SGL_RS12480 are separated by 242 nucleotidesSGL_RS12480 and SGL_RS12485 are separated by 32 nucleotidesSGL_RS12485 and SGL_RS12490 are separated by 109 nucleotides SGL_RS12475: SGL_RS12475 - cation-translocating P-type ATPase, at 2,254,112 to 2,256,454 _RS12475 SGL_RS12480: SGL_RS12480 - FHA domain-containing protein, at 2,256,697 to 2,257,170 _RS12480 SGL_RS12485: SGL_RS12485 - YebC/PmpR family DNA-binding transcriptional regulator, at 2,257,203 to 2,257,964 _RS12485 SGL_RS12490: SGL_RS12490 - glutamate--cysteine ligase, at 2,258,074 to 2,259,243 _RS12490 Position (kb) 2257 2258Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2256.219 kb on + strand, within SGL_RS12475at 2256.245 kb on - strandat 2256.406 kb on + strandat 2256.777 kb on + strand, within SGL_RS12480at 2256.933 kb on - strand, within SGL_RS12480at 2257.053 kb on + strand, within SGL_RS12480at 2257.063 kb on + strand, within SGL_RS12480at 2257.233 kb on - strandat 2257.316 kb on - strand, within SGL_RS12485at 2257.321 kb on - strand, within SGL_RS12485at 2257.426 kb on + strand, within SGL_RS12485at 2257.434 kb on - strand, within SGL_RS12485at 2257.470 kb on + strand, within SGL_RS12485at 2257.478 kb on - strand, within SGL_RS12485at 2257.494 kb on + strand, within SGL_RS12485at 2257.494 kb on - strand, within SGL_RS12485at 2257.494 kb on - strand, within SGL_RS12485at 2258.026 kb on + strandat 2258.215 kb on - strand, within SGL_RS12490at 2258.309 kb on - strand, within SGL_RS12490at 2258.332 kb on + strand, within SGL_RS12490at 2258.340 kb on - strand, within SGL_RS12490at 2258.393 kb on - strand, within SGL_RS12490at 2258.439 kb on + strand, within SGL_RS12490at 2258.550 kb on + strand, within SGL_RS12490at 2258.856 kb on + strand, within SGL_RS12490at 2258.937 kb on - strand, within SGL_RS12490at 2258.937 kb on - strand, within SGL_RS12490at 2258.942 kb on - strand, within SGL_RS12490

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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2,256,219 + SGL_RS12475 0.90 +0.2
2,256,245 - -0.2
2,256,406 + +0.8
2,256,777 + SGL_RS12480 0.17 -0.5
2,256,933 - SGL_RS12480 0.50 -0.3
2,257,053 + SGL_RS12480 0.75 -1.2
2,257,063 + SGL_RS12480 0.77 -0.6
2,257,233 - -0.7
2,257,316 - SGL_RS12485 0.15 -0.9
2,257,321 - SGL_RS12485 0.15 -1.0
2,257,426 + SGL_RS12485 0.29 -0.6
2,257,434 - SGL_RS12485 0.30 -0.8
2,257,470 + SGL_RS12485 0.35 -1.5
2,257,478 - SGL_RS12485 0.36 -1.0
2,257,494 + SGL_RS12485 0.38 -1.3
2,257,494 - SGL_RS12485 0.38 -1.0
2,257,494 - SGL_RS12485 0.38 -1.0
2,258,026 + +0.2
2,258,215 - SGL_RS12490 0.12 -2.6
2,258,309 - SGL_RS12490 0.20 -2.1
2,258,332 + SGL_RS12490 0.22 -1.8
2,258,340 - SGL_RS12490 0.23 -3.8
2,258,393 - SGL_RS12490 0.27 -4.5
2,258,439 + SGL_RS12490 0.31 -2.7
2,258,550 + SGL_RS12490 0.41 -2.3
2,258,856 + SGL_RS12490 0.67 -3.3
2,258,937 - SGL_RS12490 0.74 -3.7
2,258,937 - SGL_RS12490 0.74 -5.3
2,258,942 - SGL_RS12490 0.74 -3.0

Or see this region's nucleotide sequence