Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10145

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10140 and SGL_RS10145 are separated by 170 nucleotidesSGL_RS10145 and SGL_RS10150 are separated by 243 nucleotidesSGL_RS10150 and SGL_RS10155 are separated by 181 nucleotides SGL_RS10140: SGL_RS10140 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 1,749,146 to 1,750,510 _RS10140 SGL_RS10145: SGL_RS10145 - cytochrome c, at 1,750,681 to 1,751,067 _RS10145 SGL_RS10150: SGL_RS10150 - 50S ribosomal protein L9, at 1,751,311 to 1,751,769 _RS10150 SGL_RS10155: SGL_RS10155 - hypothetical protein, at 1,751,951 to 1,752,826 _RS10155 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1at 1750.527 kb on - strandat 1750.548 kb on - strandat 1750.622 kb on + strandat 1750.829 kb on + strand, within SGL_RS10145at 1750.889 kb on + strand, within SGL_RS10145at 1751.070 kb on - strandat 1751.070 kb on - strandat 1751.175 kb on - strandat 1751.408 kb on + strand, within SGL_RS10150at 1751.478 kb on - strand, within SGL_RS10150at 1751.649 kb on + strand, within SGL_RS10150at 1751.936 kb on + strandat 1752.017 kb on - strandat 1752.045 kb on - strand, within SGL_RS10155

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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1,750,527 - +0.0
1,750,548 - -0.1
1,750,622 + -0.1
1,750,829 + SGL_RS10145 0.38 -1.1
1,750,889 + SGL_RS10145 0.54 -1.0
1,751,070 - -0.7
1,751,070 - -0.4
1,751,175 - -0.1
1,751,408 + SGL_RS10150 0.21 +0.1
1,751,478 - SGL_RS10150 0.36 +0.1
1,751,649 + SGL_RS10150 0.74 +0.1
1,751,936 + +1.3
1,752,017 - -1.8
1,752,045 - SGL_RS10155 0.11 -2.0

Or see this region's nucleotide sequence