Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09860

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09855 and SGL_RS09860 are separated by 485 nucleotidesSGL_RS09860 and SGL_RS09865 are separated by 213 nucleotides SGL_RS09855: SGL_RS09855 - slipin family protein, at 1,694,717 to 1,695,400 _RS09855 SGL_RS09860: SGL_RS09860 - carotenoid biosynthesis protein, at 1,695,886 to 1,696,797 _RS09860 SGL_RS09865: SGL_RS09865 - cytochrome c oxidase subunit II, at 1,697,011 to 1,697,913 _RS09865 Position (kb) 1695 1696 1697Strain fitness (log2 ratio) -2 -1 0 1at 1695.078 kb on - strand, within SGL_RS09855at 1695.657 kb on - strandat 1695.747 kb on + strandat 1695.916 kb on - strandat 1695.993 kb on - strand, within SGL_RS09860at 1696.044 kb on + strand, within SGL_RS09860at 1696.178 kb on + strand, within SGL_RS09860at 1696.178 kb on + strand, within SGL_RS09860at 1696.529 kb on + strand, within SGL_RS09860at 1696.713 kb on - strandat 1696.723 kb on - strandat 1696.901 kb on + strandat 1696.915 kb on + strandat 1697.058 kb on - strandat 1697.073 kb on + strandat 1697.208 kb on + strand, within SGL_RS09865at 1697.223 kb on - strand, within SGL_RS09865at 1697.272 kb on + strand, within SGL_RS09865at 1697.284 kb on + strand, within SGL_RS09865at 1697.344 kb on + strand, within SGL_RS09865at 1697.556 kb on - strand, within SGL_RS09865at 1697.583 kb on + strand, within SGL_RS09865

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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1,695,078 - SGL_RS09855 0.53 -0.1
1,695,657 - -0.1
1,695,747 + +0.1
1,695,916 - -0.4
1,695,993 - SGL_RS09860 0.12 -1.0
1,696,044 + SGL_RS09860 0.17 -1.9
1,696,178 + SGL_RS09860 0.32 -1.0
1,696,178 + SGL_RS09860 0.32 -1.4
1,696,529 + SGL_RS09860 0.71 -1.3
1,696,713 - -1.5
1,696,723 - -0.6
1,696,901 + -0.0
1,696,915 + +0.5
1,697,058 - +0.2
1,697,073 + -0.2
1,697,208 + SGL_RS09865 0.22 -0.2
1,697,223 - SGL_RS09865 0.23 +0.2
1,697,272 + SGL_RS09865 0.29 +0.3
1,697,284 + SGL_RS09865 0.30 -0.5
1,697,344 + SGL_RS09865 0.37 +0.4
1,697,556 - SGL_RS09865 0.60 +0.0
1,697,583 + SGL_RS09865 0.63 +0.3

Or see this region's nucleotide sequence