Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07545

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07540 and SGL_RS07545 are separated by 29 nucleotidesSGL_RS07545 and SGL_RS07550 are separated by 54 nucleotides SGL_RS07540: SGL_RS07540 - endonuclease MutS2, at 1,217,156 to 1,219,624 _RS07540 SGL_RS07545: SGL_RS07545 - serine/threonine-protein phosphatase, at 1,219,654 to 1,220,418 _RS07545 SGL_RS07550: SGL_RS07550 - AarF/ABC1/UbiB kinase family protein, at 1,220,473 to 1,222,230 _RS07550 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -3 -2 -1 0 1at 1218.676 kb on + strand, within SGL_RS07540at 1218.937 kb on - strand, within SGL_RS07540at 1219.021 kb on + strand, within SGL_RS07540at 1219.211 kb on + strand, within SGL_RS07540at 1219.298 kb on + strand, within SGL_RS07540at 1219.632 kb on - strandat 1219.634 kb on - strandat 1219.660 kb on + strandat 1219.671 kb on + strandat 1219.765 kb on + strand, within SGL_RS07545at 1219.833 kb on + strand, within SGL_RS07545at 1219.833 kb on + strand, within SGL_RS07545at 1219.841 kb on - strand, within SGL_RS07545at 1219.928 kb on + strand, within SGL_RS07545at 1219.934 kb on + strand, within SGL_RS07545at 1219.942 kb on - strand, within SGL_RS07545at 1219.957 kb on - strand, within SGL_RS07545at 1220.109 kb on - strand, within SGL_RS07545at 1220.260 kb on + strand, within SGL_RS07545at 1220.322 kb on - strand, within SGL_RS07545at 1220.465 kb on - strandat 1220.595 kb on - strandat 1220.659 kb on - strand, within SGL_RS07550at 1220.690 kb on - strand, within SGL_RS07550at 1220.695 kb on - strand, within SGL_RS07550at 1220.732 kb on - strand, within SGL_RS07550at 1220.763 kb on - strand, within SGL_RS07550at 1220.828 kb on - strand, within SGL_RS07550at 1221.002 kb on - strand, within SGL_RS07550at 1221.089 kb on - strand, within SGL_RS07550at 1221.108 kb on - strand, within SGL_RS07550at 1221.198 kb on + strand, within SGL_RS07550at 1221.206 kb on - strand, within SGL_RS07550at 1221.301 kb on + strand, within SGL_RS07550

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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1,218,676 + SGL_RS07540 0.62 -0.4
1,218,937 - SGL_RS07540 0.72 +0.3
1,219,021 + SGL_RS07540 0.76 -0.1
1,219,211 + SGL_RS07540 0.83 -0.2
1,219,298 + SGL_RS07540 0.87 -0.4
1,219,632 - -0.2
1,219,634 - -0.3
1,219,660 + -0.1
1,219,671 + -1.9
1,219,765 + SGL_RS07545 0.15 -2.0
1,219,833 + SGL_RS07545 0.23 -2.4
1,219,833 + SGL_RS07545 0.23 -1.7
1,219,841 - SGL_RS07545 0.24 -3.6
1,219,928 + SGL_RS07545 0.36 -2.5
1,219,934 + SGL_RS07545 0.37 -2.0
1,219,942 - SGL_RS07545 0.38 -2.5
1,219,957 - SGL_RS07545 0.40 -0.2
1,220,109 - SGL_RS07545 0.59 -2.9
1,220,260 + SGL_RS07545 0.79 -2.3
1,220,322 - SGL_RS07545 0.87 -1.0
1,220,465 - -1.6
1,220,595 - -0.2
1,220,659 - SGL_RS07550 0.11 -0.2
1,220,690 - SGL_RS07550 0.12 -0.2
1,220,695 - SGL_RS07550 0.13 -0.6
1,220,732 - SGL_RS07550 0.15 +0.1
1,220,763 - SGL_RS07550 0.16 -0.4
1,220,828 - SGL_RS07550 0.20 -0.2
1,221,002 - SGL_RS07550 0.30 -0.7
1,221,089 - SGL_RS07550 0.35 -1.2
1,221,108 - SGL_RS07550 0.36 +0.0
1,221,198 + SGL_RS07550 0.41 -0.3
1,221,206 - SGL_RS07550 0.42 -0.2
1,221,301 + SGL_RS07550 0.47 -0.2

Or see this region's nucleotide sequence