Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04155

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04140 and SGL_RS04145 are separated by 102 nucleotidesSGL_RS04145 and SGL_RS04150 overlap by 11 nucleotidesSGL_RS04150 and SGL_RS04155 are separated by 129 nucleotidesSGL_RS04155 and SGL_RS04160 are separated by 268 nucleotides SGL_RS04140: SGL_RS04140 - hypothetical protein, at 474,789 to 475,007 _RS04140 SGL_RS04145: SGL_RS04145 - DUF86 domain-containing protein, at 475,110 to 475,445 _RS04145 SGL_RS04150: SGL_RS04150 - nucleotidyltransferase family protein, at 475,435 to 475,743 _RS04150 SGL_RS04155: SGL_RS04155 - reverse transcriptase domain-containing protein, at 475,873 to 477,399 _RS04155 SGL_RS04160: SGL_RS04160 - glutamate synthase large subunit, at 477,668 to 482,320 _RS04160 Position (kb) 475 476 477 478Strain fitness (log2 ratio) -2 -1 0 1at 476.721 kb on - strand, within SGL_RS04155at 476.737 kb on + strand, within SGL_RS04155at 476.933 kb on + strand, within SGL_RS04155at 476.954 kb on + strand, within SGL_RS04155at 477.997 kb on - strandat 478.235 kb on - strand, within SGL_RS04160at 478.236 kb on - strand, within SGL_RS04160at 478.237 kb on - strand, within SGL_RS04160at 478.323 kb on - strand, within SGL_RS04160at 478.325 kb on - strand, within SGL_RS04160

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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476,721 - SGL_RS04155 0.56 -1.9
476,737 + SGL_RS04155 0.57 -1.2
476,933 + SGL_RS04155 0.69 -2.4
476,954 + SGL_RS04155 0.71 -2.4
477,997 - -0.0
478,235 - SGL_RS04160 0.12 -0.0
478,236 - SGL_RS04160 0.12 +0.0
478,237 - SGL_RS04160 0.12 +0.3
478,323 - SGL_RS04160 0.14 +0.1
478,325 - SGL_RS04160 0.14 -0.2

Or see this region's nucleotide sequence