Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03440

Experiment: Manganese (II) chloride tetrahydrate 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03435 and SGL_RS03440 are separated by 195 nucleotidesSGL_RS03440 and SGL_RS03445 are separated by 17 nucleotidesSGL_RS03445 and SGL_RS03450 are separated by 164 nucleotides SGL_RS03435: SGL_RS03435 - 3-deoxy-7-phosphoheptulonate synthase, at 334,568 to 335,623 _RS03435 SGL_RS03440: SGL_RS03440 - PAM68 family protein, at 335,819 to 336,295 _RS03440 SGL_RS03445: SGL_RS03445 - 30S ribosomal protein S15, at 336,313 to 336,582 _RS03445 SGL_RS03450: SGL_RS03450 - permease, at 336,747 to 337,760 _RS03450 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1at 335.837 kb on - strandat 335.837 kb on - strandat 335.842 kb on - strandat 335.906 kb on + strand, within SGL_RS03440at 335.914 kb on - strand, within SGL_RS03440at 335.914 kb on - strand, within SGL_RS03440at 335.965 kb on - strand, within SGL_RS03440at 335.992 kb on + strand, within SGL_RS03440at 336.101 kb on - strand, within SGL_RS03440at 336.106 kb on - strand, within SGL_RS03440at 336.704 kb on + strandat 336.842 kb on + strandat 336.850 kb on - strand, within SGL_RS03450

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 150 uM
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335,837 - -1.5
335,837 - -1.4
335,842 - -2.5
335,906 + SGL_RS03440 0.18 -1.7
335,914 - SGL_RS03440 0.20 -1.5
335,914 - SGL_RS03440 0.20 -1.4
335,965 - SGL_RS03440 0.31 -2.9
335,992 + SGL_RS03440 0.36 -2.0
336,101 - SGL_RS03440 0.59 -0.8
336,106 - SGL_RS03440 0.60 -0.6
336,704 + +0.0
336,842 + +0.8
336,850 - SGL_RS03450 0.10 -0.6

Or see this region's nucleotide sequence