Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18295

Experiment: Cobalt chloride 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18285 and SGL_RS18290 are separated by 74 nucleotidesSGL_RS18290 and SGL_RS18295 are separated by 142 nucleotidesSGL_RS18295 and SGL_RS18300 are separated by 58 nucleotides SGL_RS18285: SGL_RS18285 - ABC transporter permease, at 3,551,159 to 3,552,382 _RS18285 SGL_RS18290: SGL_RS18290 - transcriptional repressor, at 3,552,457 to 3,552,954 _RS18290 SGL_RS18295: SGL_RS18295 - creatininase family protein, at 3,553,097 to 3,553,918 _RS18295 SGL_RS18300: SGL_RS18300 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,553,977 to 3,555,512 _RS18300 Position (kb) 3553 3554Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3552.131 kb on + strand, within SGL_RS18285at 3552.167 kb on + strand, within SGL_RS18285at 3552.191 kb on - strand, within SGL_RS18285at 3552.366 kb on - strandat 3552.370 kb on + strandat 3552.370 kb on + strandat 3553.156 kb on + strandat 3553.351 kb on + strand, within SGL_RS18295at 3553.366 kb on - strand, within SGL_RS18295at 3553.392 kb on - strand, within SGL_RS18295at 3553.489 kb on - strand, within SGL_RS18295at 3553.598 kb on - strand, within SGL_RS18295at 3553.598 kb on - strand, within SGL_RS18295at 3553.656 kb on + strand, within SGL_RS18295at 3554.066 kb on + strandat 3554.074 kb on - strandat 3554.364 kb on + strand, within SGL_RS18300at 3554.414 kb on - strand, within SGL_RS18300at 3554.438 kb on + strand, within SGL_RS18300at 3554.511 kb on - strand, within SGL_RS18300at 3554.648 kb on + strand, within SGL_RS18300at 3554.686 kb on - strand, within SGL_RS18300at 3554.706 kb on + strand, within SGL_RS18300at 3554.775 kb on - strand, within SGL_RS18300

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM
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3,552,131 + SGL_RS18285 0.79 +0.1
3,552,167 + SGL_RS18285 0.82 -0.6
3,552,191 - SGL_RS18285 0.84 +0.1
3,552,366 - +0.4
3,552,370 + -0.4
3,552,370 + -0.1
3,553,156 + -0.6
3,553,351 + SGL_RS18295 0.31 +0.1
3,553,366 - SGL_RS18295 0.33 -0.7
3,553,392 - SGL_RS18295 0.36 -0.0
3,553,489 - SGL_RS18295 0.48 -0.5
3,553,598 - SGL_RS18295 0.61 -0.1
3,553,598 - SGL_RS18295 0.61 -0.4
3,553,656 + SGL_RS18295 0.68 -0.6
3,554,066 + -2.3
3,554,074 - -2.0
3,554,364 + SGL_RS18300 0.25 -2.0
3,554,414 - SGL_RS18300 0.28 -3.6
3,554,438 + SGL_RS18300 0.30 -2.6
3,554,511 - SGL_RS18300 0.35 -2.6
3,554,648 + SGL_RS18300 0.44 -3.7
3,554,686 - SGL_RS18300 0.46 -4.4
3,554,706 + SGL_RS18300 0.47 -2.6
3,554,775 - SGL_RS18300 0.52 -3.0

Or see this region's nucleotide sequence