Experiment: Cobalt chloride 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18285 and SGL_RS18290 are separated by 74 nucleotides SGL_RS18290 and SGL_RS18295 are separated by 142 nucleotides SGL_RS18295 and SGL_RS18300 are separated by 58 nucleotides
SGL_RS18285: SGL_RS18285 - ABC transporter permease, at 3,551,159 to 3,552,382
_RS18285
SGL_RS18290: SGL_RS18290 - transcriptional repressor, at 3,552,457 to 3,552,954
_RS18290
SGL_RS18295: SGL_RS18295 - creatininase family protein, at 3,553,097 to 3,553,918
_RS18295
SGL_RS18300: SGL_RS18300 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,553,977 to 3,555,512
_RS18300
Position (kb)
3553
3554 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3552.131 kb on + strand, within SGL_RS18285 at 3552.167 kb on + strand, within SGL_RS18285 at 3552.191 kb on - strand, within SGL_RS18285 at 3552.366 kb on - strand at 3552.370 kb on + strand at 3552.370 kb on + strand at 3553.156 kb on + strand at 3553.351 kb on + strand, within SGL_RS18295 at 3553.366 kb on - strand, within SGL_RS18295 at 3553.392 kb on - strand, within SGL_RS18295 at 3553.489 kb on - strand, within SGL_RS18295 at 3553.598 kb on - strand, within SGL_RS18295 at 3553.598 kb on - strand, within SGL_RS18295 at 3553.656 kb on + strand, within SGL_RS18295 at 3554.066 kb on + strand at 3554.074 kb on - strand at 3554.364 kb on + strand, within SGL_RS18300 at 3554.414 kb on - strand, within SGL_RS18300 at 3554.438 kb on + strand, within SGL_RS18300 at 3554.511 kb on - strand, within SGL_RS18300 at 3554.648 kb on + strand, within SGL_RS18300 at 3554.686 kb on - strand, within SGL_RS18300 at 3554.706 kb on + strand, within SGL_RS18300 at 3554.775 kb on - strand, within SGL_RS18300
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM remove 3,552,131 + SGL_RS18285 0.79 +0.1 3,552,167 + SGL_RS18285 0.82 -0.6 3,552,191 - SGL_RS18285 0.84 +0.1 3,552,366 - +0.4 3,552,370 + -0.4 3,552,370 + -0.1 3,553,156 + -0.6 3,553,351 + SGL_RS18295 0.31 +0.1 3,553,366 - SGL_RS18295 0.33 -0.7 3,553,392 - SGL_RS18295 0.36 -0.0 3,553,489 - SGL_RS18295 0.48 -0.5 3,553,598 - SGL_RS18295 0.61 -0.1 3,553,598 - SGL_RS18295 0.61 -0.4 3,553,656 + SGL_RS18295 0.68 -0.6 3,554,066 + -2.3 3,554,074 - -2.0 3,554,364 + SGL_RS18300 0.25 -2.0 3,554,414 - SGL_RS18300 0.28 -3.6 3,554,438 + SGL_RS18300 0.30 -2.6 3,554,511 - SGL_RS18300 0.35 -2.6 3,554,648 + SGL_RS18300 0.44 -3.7 3,554,686 - SGL_RS18300 0.46 -4.4 3,554,706 + SGL_RS18300 0.47 -2.6 3,554,775 - SGL_RS18300 0.52 -3.0
Or see this region's nucleotide sequence