Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17825

Experiment: Cobalt chloride 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17820 and SGL_RS17825 are separated by 90 nucleotidesSGL_RS17825 and SGL_RS17830 are separated by 184 nucleotides SGL_RS17820: SGL_RS17820 - photosystem I reaction center protein subunit XI, at 3,457,459 to 3,457,932 _RS17820 SGL_RS17825: SGL_RS17825 - photosystem I reaction center subunit VIII, at 3,458,023 to 3,458,145 _RS17825 SGL_RS17830: SGL_RS17830 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 3,458,330 to 3,459,397 _RS17830 Position (kb) 3458 3459Strain fitness (log2 ratio) -2 -1 0 1at 3457.119 kb on + strandat 3457.119 kb on + strandat 3457.215 kb on + strandat 3457.233 kb on - strandat 3457.301 kb on - strandat 3457.315 kb on + strandat 3457.315 kb on + strandat 3457.469 kb on - strandat 3457.494 kb on + strandat 3457.599 kb on + strand, within SGL_RS17820at 3457.711 kb on + strand, within SGL_RS17820at 3458.121 kb on + strand, within SGL_RS17825at 3458.204 kb on - strandat 3458.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM
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3,457,119 + -0.1
3,457,119 + +0.3
3,457,215 + +0.4
3,457,233 - -0.7
3,457,301 - -0.2
3,457,315 + +0.3
3,457,315 + -0.2
3,457,469 - -2.1
3,457,494 + +1.4
3,457,599 + SGL_RS17820 0.30 -1.0
3,457,711 + SGL_RS17820 0.53 -2.1
3,458,121 + SGL_RS17825 0.80 -1.4
3,458,204 - -0.2
3,458,296 + -0.7

Or see this region's nucleotide sequence