Experiment: Cobalt chloride 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16665 and SGL_RS16670 are separated by 240 nucleotides SGL_RS16670 and SGL_RS16675 are separated by 106 nucleotides
SGL_RS16665: SGL_RS16665 - transglycosylase SLT domain-containing protein, at 3,194,023 to 3,196,542
_RS16665
SGL_RS16670: SGL_RS16670 - DUF5942 domain-containing protein, at 3,196,783 to 3,198,624
_RS16670
SGL_RS16675: SGL_RS16675 - uroporphyrinogen decarboxylase, at 3,198,731 to 3,199,783
_RS16675
Position (kb)
3196
3197
3198
3199 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3195.861 kb on - strand, within SGL_RS16665 at 3195.879 kb on - strand, within SGL_RS16665 at 3196.123 kb on + strand, within SGL_RS16665 at 3196.211 kb on - strand, within SGL_RS16665 at 3196.272 kb on + strand, within SGL_RS16665 at 3196.558 kb on + strand at 3196.558 kb on + strand at 3197.020 kb on + strand, within SGL_RS16670 at 3197.119 kb on - strand, within SGL_RS16670 at 3197.283 kb on - strand, within SGL_RS16670 at 3197.383 kb on - strand, within SGL_RS16670 at 3197.397 kb on + strand, within SGL_RS16670 at 3197.720 kb on - strand, within SGL_RS16670 at 3197.720 kb on - strand, within SGL_RS16670 at 3197.730 kb on + strand, within SGL_RS16670 at 3197.937 kb on + strand, within SGL_RS16670 at 3197.971 kb on + strand, within SGL_RS16670 at 3197.986 kb on + strand, within SGL_RS16670 at 3198.027 kb on - strand, within SGL_RS16670 at 3198.172 kb on + strand, within SGL_RS16670 at 3198.180 kb on - strand, within SGL_RS16670 at 3198.180 kb on - strand, within SGL_RS16670 at 3198.187 kb on - strand, within SGL_RS16670 at 3198.253 kb on + strand, within SGL_RS16670 at 3198.351 kb on + strand, within SGL_RS16670 at 3198.481 kb on - strand at 3198.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM remove 3,195,861 - SGL_RS16665 0.73 +0.1 3,195,879 - SGL_RS16665 0.74 +0.1 3,196,123 + SGL_RS16665 0.83 -0.1 3,196,211 - SGL_RS16665 0.87 -0.0 3,196,272 + SGL_RS16665 0.89 +0.2 3,196,558 + -0.1 3,196,558 + -0.3 3,197,020 + SGL_RS16670 0.13 -1.8 3,197,119 - SGL_RS16670 0.18 -1.6 3,197,283 - SGL_RS16670 0.27 -2.2 3,197,383 - SGL_RS16670 0.33 -1.6 3,197,397 + SGL_RS16670 0.33 -2.2 3,197,720 - SGL_RS16670 0.51 -1.2 3,197,720 - SGL_RS16670 0.51 -1.7 3,197,730 + SGL_RS16670 0.51 -1.6 3,197,937 + SGL_RS16670 0.63 -1.6 3,197,971 + SGL_RS16670 0.64 -1.9 3,197,986 + SGL_RS16670 0.65 -1.9 3,198,027 - SGL_RS16670 0.68 -1.2 3,198,172 + SGL_RS16670 0.75 -1.7 3,198,180 - SGL_RS16670 0.76 -1.8 3,198,180 - SGL_RS16670 0.76 -2.2 3,198,187 - SGL_RS16670 0.76 -1.9 3,198,253 + SGL_RS16670 0.80 -2.1 3,198,351 + SGL_RS16670 0.85 -2.8 3,198,481 - -3.1 3,198,582 - -0.1
Or see this region's nucleotide sequence