Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12620

Experiment: Cobalt chloride 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12610 and SGL_RS12615 are separated by 51 nucleotidesSGL_RS12615 and SGL_RS12620 are separated by 266 nucleotidesSGL_RS12620 and SGL_RS12625 are separated by 368 nucleotides SGL_RS12610: SGL_RS12610 - Uma2 family endonuclease, at 2,286,186 to 2,286,746 _RS12610 SGL_RS12615: SGL_RS12615 - helix-turn-helix transcriptional regulator, at 2,286,798 to 2,287,067 _RS12615 SGL_RS12620: SGL_RS12620 - photosystem I iron-sulfur center protein PsaC, at 2,287,334 to 2,287,579 _RS12620 SGL_RS12625: SGL_RS12625 - NAD(P)H-quinone oxidoreductase subunit 4, at 2,287,948 to 2,289,525 _RS12625 Position (kb) 2287 2288Strain fitness (log2 ratio) -1 0 1at 2286.974 kb on + strand, within SGL_RS12615at 2286.997 kb on - strand, within SGL_RS12615at 2288.100 kb on + strandat 2288.116 kb on - strand, within SGL_RS12625at 2288.200 kb on - strand, within SGL_RS12625at 2288.307 kb on + strand, within SGL_RS12625at 2288.562 kb on + strand, within SGL_RS12625

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM
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2,286,974 + SGL_RS12615 0.65 -1.2
2,286,997 - SGL_RS12615 0.74 +0.3
2,288,100 + -1.4
2,288,116 - SGL_RS12625 0.11 -0.3
2,288,200 - SGL_RS12625 0.16 -0.1
2,288,307 + SGL_RS12625 0.23 -1.1
2,288,562 + SGL_RS12625 0.39 -0.7

Or see this region's nucleotide sequence