Experiment: Cobalt chloride 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10295 and SGL_RS10300 are separated by 86 nucleotides SGL_RS10300 and SGL_RS10305 are separated by 182 nucleotides SGL_RS10305 and SGL_RS10310 are separated by 59 nucleotides SGL_RS10310 and SGL_RS10315 are separated by 274 nucleotides
SGL_RS10295: SGL_RS10295 - GAF domain-containing protein, at 1,782,057 to 1,783,355
_RS10295
SGL_RS10300: SGL_RS10300 - hypothetical protein, at 1,783,442 to 1,783,672
_RS10300
SGL_RS10305: SGL_RS10305 - PIN/TRAM domain-containing protein, at 1,783,855 to 1,784,934
_RS10305
SGL_RS10310: SGL_RS10310 - hypothetical protein, at 1,784,994 to 1,785,560
_RS10310
SGL_RS10315: SGL_RS10315 - hypothetical protein, at 1,785,835 to 1,788,357
_RS10315
Position (kb)
1783
1784
1785 Strain fitness (log2 ratio)
-2
-1
0
1 at 1782.967 kb on - strand, within SGL_RS10295 at 1782.987 kb on + strand, within SGL_RS10295 at 1783.008 kb on - strand, within SGL_RS10295 at 1783.193 kb on + strand, within SGL_RS10295 at 1783.364 kb on + strand at 1783.377 kb on + strand at 1783.574 kb on + strand, within SGL_RS10300 at 1783.910 kb on - strand at 1784.226 kb on + strand, within SGL_RS10305 at 1784.249 kb on + strand, within SGL_RS10305 at 1784.318 kb on + strand, within SGL_RS10305 at 1784.383 kb on + strand, within SGL_RS10305 at 1784.383 kb on + strand, within SGL_RS10305 at 1784.472 kb on + strand, within SGL_RS10305 at 1784.558 kb on - strand, within SGL_RS10305 at 1784.708 kb on - strand, within SGL_RS10305 at 1784.991 kb on + strand at 1784.991 kb on + strand at 1785.162 kb on - strand, within SGL_RS10310 at 1785.291 kb on + strand, within SGL_RS10310 at 1785.319 kb on - strand, within SGL_RS10310 at 1785.356 kb on - strand, within SGL_RS10310 at 1785.671 kb on + strand at 1785.679 kb on - strand at 1785.726 kb on - strand at 1785.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM remove 1,782,967 - SGL_RS10295 0.70 -0.6 1,782,987 + SGL_RS10295 0.72 +0.1 1,783,008 - SGL_RS10295 0.73 +0.0 1,783,193 + SGL_RS10295 0.87 -0.2 1,783,364 + +0.2 1,783,377 + -0.3 1,783,574 + SGL_RS10300 0.57 -0.6 1,783,910 - -1.6 1,784,226 + SGL_RS10305 0.34 -1.8 1,784,249 + SGL_RS10305 0.36 -1.6 1,784,318 + SGL_RS10305 0.43 -2.2 1,784,383 + SGL_RS10305 0.49 -2.4 1,784,383 + SGL_RS10305 0.49 -1.7 1,784,472 + SGL_RS10305 0.57 -1.8 1,784,558 - SGL_RS10305 0.65 -2.1 1,784,708 - SGL_RS10305 0.79 -1.4 1,784,991 + -0.1 1,784,991 + +0.2 1,785,162 - SGL_RS10310 0.30 +0.1 1,785,291 + SGL_RS10310 0.52 -0.1 1,785,319 - SGL_RS10310 0.57 +0.1 1,785,356 - SGL_RS10310 0.64 +0.5 1,785,671 + -0.2 1,785,679 - -0.1 1,785,726 - +0.4 1,785,763 + +0.3
Or see this region's nucleotide sequence