Experiment: Cobalt chloride 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07930 and SGL_RS07935 are separated by 16 nucleotides SGL_RS07935 and SGL_RS07940 are separated by 1 nucleotides SGL_RS07940 and SGL_RS07945 are separated by 98 nucleotides
SGL_RS07930: SGL_RS07930 - hypothetical protein, at 1,293,398 to 1,295,551
_RS07930
SGL_RS07935: SGL_RS07935 - hypothetical protein, at 1,295,568 to 1,296,380
_RS07935
SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894
_RS07940
SGL_RS07945: SGL_RS07945 - type IV pilin-like G/H family protein, at 1,296,993 to 1,297,499
_RS07945
Position (kb) 1295
1296
1297 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1294.629 kb on - strand, within SGL_RS07930 at 1294.739 kb on + strand, within SGL_RS07930 at 1294.900 kb on - strand, within SGL_RS07930 at 1294.917 kb on + strand, within SGL_RS07930 at 1295.068 kb on + strand, within SGL_RS07930 at 1295.074 kb on + strand, within SGL_RS07930 at 1295.201 kb on + strand, within SGL_RS07930 at 1295.247 kb on + strand, within SGL_RS07930 at 1295.287 kb on - strand, within SGL_RS07930 at 1295.620 kb on - strand at 1295.817 kb on + strand, within SGL_RS07935 at 1295.838 kb on + strand, within SGL_RS07935 at 1296.079 kb on - strand, within SGL_RS07935 at 1296.398 kb on - strand at 1296.474 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1297.108 kb on - strand, within SGL_RS07945 at 1297.163 kb on - strand, within SGL_RS07945 at 1297.366 kb on + strand, within SGL_RS07945
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM remove 1,294,629 - SGL_RS07930 0.57 -3.1 1,294,739 + SGL_RS07930 0.62 -1.1 1,294,900 - SGL_RS07930 0.70 -1.3 1,294,917 + SGL_RS07930 0.71 -0.9 1,295,068 + SGL_RS07930 0.78 -2.2 1,295,074 + SGL_RS07930 0.78 -0.8 1,295,201 + SGL_RS07930 0.84 -0.7 1,295,247 + SGL_RS07930 0.86 -1.5 1,295,287 - SGL_RS07930 0.88 -1.2 1,295,620 - -1.6 1,295,817 + SGL_RS07935 0.31 -2.6 1,295,838 + SGL_RS07935 0.33 -2.6 1,296,079 - SGL_RS07935 0.63 -3.4 1,296,398 - -0.6 1,296,474 + SGL_RS07940 0.18 -0.4 1,296,773 + SGL_RS07940 0.76 -1.1 1,296,773 + SGL_RS07940 0.76 -0.6 1,297,108 - SGL_RS07945 0.23 -1.4 1,297,163 - SGL_RS07945 0.34 -1.1 1,297,366 + SGL_RS07945 0.74 -1.3
Or see this region's nucleotide sequence