Experiment: Cobalt chloride 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07600 and SGL_RS07605 are separated by 52 nucleotides SGL_RS07605 and SGL_RS07610 are separated by 32 nucleotides
SGL_RS07600: SGL_RS07600 - fumarylacetoacetate hydrolase family protein, at 1,228,237 to 1,229,067
_RS07600
SGL_RS07605: SGL_RS07605 - HEAT repeat domain-containing protein, at 1,229,120 to 1,229,938
_RS07605
SGL_RS07610: SGL_RS07610 - cyclophane-forming radical SAM/SPASM peptide maturase GrrM/OscB, at 1,229,971 to 1,231,167
_RS07610
Position (kb)
1229
1230 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1228.134 kb on - strand at 1228.271 kb on - strand at 1228.281 kb on + strand at 1228.359 kb on - strand, within SGL_RS07600 at 1228.366 kb on - strand, within SGL_RS07600 at 1228.649 kb on - strand, within SGL_RS07600 at 1228.876 kb on + strand, within SGL_RS07600 at 1228.883 kb on + strand, within SGL_RS07600 at 1228.925 kb on + strand, within SGL_RS07600 at 1229.017 kb on + strand at 1229.017 kb on + strand at 1229.380 kb on + strand, within SGL_RS07605 at 1229.397 kb on + strand, within SGL_RS07605 at 1229.577 kb on + strand, within SGL_RS07605 at 1229.602 kb on - strand, within SGL_RS07605 at 1229.705 kb on + strand, within SGL_RS07605 at 1229.780 kb on + strand, within SGL_RS07605 at 1230.158 kb on + strand, within SGL_RS07610 at 1230.160 kb on - strand, within SGL_RS07610 at 1230.827 kb on - strand, within SGL_RS07610
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM remove 1,228,134 - -0.5 1,228,271 - -1.0 1,228,281 + -0.6 1,228,359 - SGL_RS07600 0.15 -0.2 1,228,366 - SGL_RS07600 0.16 -0.2 1,228,649 - SGL_RS07600 0.50 -0.4 1,228,876 + SGL_RS07600 0.77 -0.3 1,228,883 + SGL_RS07600 0.78 +0.3 1,228,925 + SGL_RS07600 0.83 +0.1 1,229,017 + -0.2 1,229,017 + +0.8 1,229,380 + SGL_RS07605 0.32 -3.5 1,229,397 + SGL_RS07605 0.34 -1.9 1,229,577 + SGL_RS07605 0.56 -1.2 1,229,602 - SGL_RS07605 0.59 -1.1 1,229,705 + SGL_RS07605 0.71 -3.2 1,229,780 + SGL_RS07605 0.81 -1.4 1,230,158 + SGL_RS07610 0.16 -0.1 1,230,160 - SGL_RS07610 0.16 -0.1 1,230,827 - SGL_RS07610 0.72 -0.1
Or see this region's nucleotide sequence