Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06310

Experiment: Cobalt chloride 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06305 and SGL_RS06310 are separated by 245 nucleotidesSGL_RS06310 and SGL_RS06315 are separated by 139 nucleotides SGL_RS06305: SGL_RS06305 - photosystem I core protein PsaA, at 941,686 to 943,941 _RS06305 SGL_RS06310: SGL_RS06310 - photosystem I core protein PsaB, at 944,187 to 946,382 _RS06310 SGL_RS06315: SGL_RS06315 - phosphotransferase, at 946,522 to 947,511 _RS06315 Position (kb) 944 945 946 947Strain fitness (log2 ratio) -1 0 1at 946.804 kb on + strand, within SGL_RS06315at 947.178 kb on + strand, within SGL_RS06315at 947.182 kb on + strand, within SGL_RS06315at 947.190 kb on - strand, within SGL_RS06315at 947.201 kb on + strand, within SGL_RS06315at 947.218 kb on + strand, within SGL_RS06315at 947.372 kb on + strand, within SGL_RS06315at 947.380 kb on - strand, within SGL_RS06315

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM
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946,804 + SGL_RS06315 0.28 -0.6
947,178 + SGL_RS06315 0.66 +0.3
947,182 + SGL_RS06315 0.67 -0.4
947,190 - SGL_RS06315 0.67 +0.1
947,201 + SGL_RS06315 0.69 +0.3
947,218 + SGL_RS06315 0.70 -0.3
947,372 + SGL_RS06315 0.86 +0.5
947,380 - SGL_RS06315 0.87 +0.6

Or see this region's nucleotide sequence