Experiment: Cobalt chloride 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02590 and SGL_RS02595 are separated by 11 nucleotides SGL_RS02595 and SGL_RS02600 are separated by 132 nucleotides SGL_RS02600 and SGL_RS02605 are separated by 89 nucleotides SGL_RS02605 and SGL_RS02610 are separated by 36 nucleotides
SGL_RS02590: SGL_RS02590 - LPS export ABC transporter ATP-binding protein, at 154,703 to 155,461
_RS02590
SGL_RS02595: SGL_RS02595 - precorrin-6A reductase, at 155,473 to 156,258
_RS02595
SGL_RS02600: SGL_RS02600 - photosystem I reaction center subunit PsaK, at 156,391 to 156,651
_RS02600
SGL_RS02605: SGL_RS02605 - hypothetical protein, at 156,741 to 157,013
_RS02605
SGL_RS02610: SGL_RS02610 - NAD(P)H-quinone oxidoreductase subunit N, at 157,050 to 158,615
_RS02610
Position (kb) 156
157 Strain fitness (log2 ratio) -2
-1
0
1 at 155.915 kb on + strand, within SGL_RS02595 at 155.975 kb on + strand, within SGL_RS02595 at 156.001 kb on - strand, within SGL_RS02595 at 156.307 kb on - strand at 156.474 kb on - strand, within SGL_RS02600 at 156.574 kb on + strand, within SGL_RS02600 at 156.582 kb on - strand, within SGL_RS02600 at 156.682 kb on - strand at 156.834 kb on + strand, within SGL_RS02605 at 157.053 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM remove 155,915 + SGL_RS02595 0.56 -2.6 155,975 + SGL_RS02595 0.64 -1.0 156,001 - SGL_RS02595 0.67 -2.4 156,307 - -0.1 156,474 - SGL_RS02600 0.32 +0.6 156,574 + SGL_RS02600 0.70 +0.2 156,582 - SGL_RS02600 0.73 -0.0 156,682 - +0.1 156,834 + SGL_RS02605 0.34 -0.0 157,053 + +0.0
Or see this region's nucleotide sequence