Experiment: Cobalt chloride 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02570 and SGL_RS02580 are separated by 571 nucleotides SGL_RS02580 and SGL_RS02585 are separated by 146 nucleotides SGL_RS02585 and SGL_RS02590 are separated by 23 nucleotides
SGL_RS02570: SGL_RS02570 - amino acid ABC transporter substrate-binding protein, at 152,154 to 153,050
_RS02570
SGL_RS02580: SGL_RS02580 - DUF1818 family protein, at 153,622 to 153,996
_RS02580
SGL_RS02585: SGL_RS02585 - LptA/OstA family protein, at 154,143 to 154,679
_RS02585
SGL_RS02590: SGL_RS02590 - LPS export ABC transporter ATP-binding protein, at 154,703 to 155,461
_RS02590
Position (kb) 153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 152.641 kb on + strand, within SGL_RS02570 at 152.900 kb on + strand, within SGL_RS02570 at 152.915 kb on - strand, within SGL_RS02570 at 152.975 kb on - strand at 153.006 kb on - strand at 153.052 kb on + strand at 153.139 kb on + strand at 153.140 kb on - strand at 153.147 kb on - strand at 153.882 kb on - strand, within SGL_RS02580 at 153.920 kb on - strand, within SGL_RS02580 at 153.927 kb on - strand, within SGL_RS02580 at 153.940 kb on - strand, within SGL_RS02580 at 154.020 kb on - strand at 154.031 kb on - strand at 154.037 kb on + strand at 154.587 kb on - strand, within SGL_RS02585 at 154.592 kb on + strand, within SGL_RS02585 at 154.600 kb on - strand, within SGL_RS02585 at 154.609 kb on + strand, within SGL_RS02585 at 154.617 kb on - strand, within SGL_RS02585
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM remove 152,641 + SGL_RS02570 0.54 +0.0 152,900 + SGL_RS02570 0.83 -0.2 152,915 - SGL_RS02570 0.85 -0.2 152,975 - -0.1 153,006 - -0.1 153,052 + -0.2 153,139 + -0.1 153,140 - +0.0 153,147 - +0.1 153,882 - SGL_RS02580 0.69 -1.6 153,920 - SGL_RS02580 0.79 -3.5 153,927 - SGL_RS02580 0.81 -3.5 153,940 - SGL_RS02580 0.85 -3.7 154,020 - +0.3 154,031 - +0.0 154,037 + +0.2 154,587 - SGL_RS02585 0.83 -1.3 154,592 + SGL_RS02585 0.84 +0.1 154,600 - SGL_RS02585 0.85 -0.5 154,609 + SGL_RS02585 0.87 +0.2 154,617 - SGL_RS02585 0.88 +0.6
Or see this region's nucleotide sequence