Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02510

Experiment: Cobalt chloride 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02505 and SGL_RS02510 are separated by 116 nucleotidesSGL_RS02510 and SGL_RS02515 overlap by 1 nucleotides SGL_RS02505: SGL_RS02505 - precorrin-4 C(11)-methyltransferase, at 141,648 to 142,442 _RS02505 SGL_RS02510: SGL_RS02510 - BlaI/MecI/CopY family transcriptional regulator, at 142,559 to 142,981 _RS02510 SGL_RS02515: SGL_RS02515 - M56 family metallopeptidase, at 142,981 to 143,826 _RS02515 Position (kb) 142 143Strain fitness (log2 ratio) -3 -2 -1 0 1at 141.814 kb on - strand, within SGL_RS02505at 142.158 kb on + strand, within SGL_RS02505at 142.166 kb on - strand, within SGL_RS02505at 142.251 kb on - strand, within SGL_RS02505at 142.336 kb on + strand, within SGL_RS02505at 142.420 kb on + strandat 142.455 kb on - strandat 142.526 kb on - strandat 142.526 kb on - strandat 142.545 kb on - strandat 142.602 kb on + strand, within SGL_RS02510at 142.813 kb on + strand, within SGL_RS02510at 142.894 kb on + strand, within SGL_RS02510at 142.950 kb on + strandat 143.018 kb on + strandat 143.023 kb on + strandat 143.210 kb on + strand, within SGL_RS02515at 143.343 kb on + strand, within SGL_RS02515at 143.357 kb on + strand, within SGL_RS02515at 143.419 kb on + strand, within SGL_RS02515at 143.543 kb on + strand, within SGL_RS02515at 143.664 kb on + strand, within SGL_RS02515at 143.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM
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141,814 - SGL_RS02505 0.21 -2.4
142,158 + SGL_RS02505 0.64 -2.6
142,166 - SGL_RS02505 0.65 -0.0
142,251 - SGL_RS02505 0.76 -3.4
142,336 + SGL_RS02505 0.87 -3.5
142,420 + +0.3
142,455 - +0.5
142,526 - -0.7
142,526 - -0.0
142,545 - -0.4
142,602 + SGL_RS02510 0.10 -1.3
142,813 + SGL_RS02510 0.60 -1.3
142,894 + SGL_RS02510 0.79 -0.9
142,950 + -0.1
143,018 + -1.2
143,023 + -1.1
143,210 + SGL_RS02515 0.27 -2.7
143,343 + SGL_RS02515 0.43 -1.7
143,357 + SGL_RS02515 0.44 -1.2
143,419 + SGL_RS02515 0.52 -0.9
143,543 + SGL_RS02515 0.66 -2.4
143,664 + SGL_RS02515 0.81 -1.2
143,927 + -0.4

Or see this region's nucleotide sequence