Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19880

Experiment: Cobalt chloride 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10020 and SGL_RS18875 are separated by 252 nucleotidesSGL_RS18875 and SGL_RS19880 overlap by 91 nucleotidesSGL_RS19880 and SGL_RS10035 are separated by 418 nucleotides SGL_RS10020: SGL_RS10020 - dCTP deaminase, at 1,724,597 to 1,725,178 _RS10020 SGL_RS18875: SGL_RS18875 - IS630 family transposase, at 1,725,431 to 1,726,009 _RS18875 SGL_RS19880: SGL_RS19880 - IS630 transposase-related protein, at 1,725,919 to 1,726,278 _RS19880 SGL_RS10035: SGL_RS10035 - VWA domain-containing protein, at 1,726,697 to 1,727,299 _RS10035 Position (kb) 1725 1726 1727Strain fitness (log2 ratio) -1 0 1at 1725.257 kb on + strandat 1726.899 kb on - strand, within SGL_RS10035at 1727.187 kb on - strand, within SGL_RS10035at 1727.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 3 uM
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1,725,257 + +0.0
1,726,899 - SGL_RS10035 0.33 -0.5
1,727,187 - SGL_RS10035 0.81 +0.4
1,727,246 - -0.1

Or see this region's nucleotide sequence