Experiment: m-arsenite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17905 and SGL_RS19140 are separated by 607 nucleotides SGL_RS19140 and SGL_RS19525 overlap by 48 nucleotides SGL_RS19525 and SGL_RS17920 overlap by 4 nucleotides SGL_RS17920 and SGL_RS17925 are separated by 440 nucleotides
SGL_RS17905: SGL_RS17905 - response regulator transcription factor, at 3,473,513 to 3,474,199
_RS17905
SGL_RS19140: SGL_RS19140 - DUF433 domain-containing protein, at 3,474,807 to 3,474,998
_RS19140
SGL_RS19525: SGL_RS19525 - hypothetical protein, at 3,474,951 to 3,475,184
_RS19525
SGL_RS17920: SGL_RS17920 - PIN domain-containing protein, at 3,475,181 to 3,475,618
_RS17920
SGL_RS17925: SGL_RS17925 - hypothetical protein, at 3,476,059 to 3,476,595
_RS17925
Position (kb)
3475
3476 Strain fitness (log2 ratio)
-1
0
1 at 3474.196 kb on - strand at 3474.595 kb on - strand at 3474.698 kb on - strand at 3474.744 kb on - strand at 3474.844 kb on - strand, within SGL_RS19140 at 3474.943 kb on + strand, within SGL_RS19140 at 3474.950 kb on - strand, within SGL_RS19140 at 3474.992 kb on + strand at 3475.038 kb on - strand, within SGL_RS19525 at 3475.205 kb on - strand at 3475.207 kb on + strand at 3475.355 kb on + strand, within SGL_RS17920 at 3475.397 kb on + strand, within SGL_RS17920 at 3475.425 kb on + strand, within SGL_RS17920 at 3475.492 kb on - strand, within SGL_RS17920 at 3476.198 kb on + strand, within SGL_RS17925 at 3476.198 kb on + strand, within SGL_RS17925 at 3476.220 kb on + strand, within SGL_RS17925 at 3476.334 kb on - strand, within SGL_RS17925 at 3476.359 kb on - strand, within SGL_RS17925 at 3476.384 kb on + strand, within SGL_RS17925 at 3476.442 kb on - strand, within SGL_RS17925
Per-strain Table
Position Strand Gene LocusTag Fraction m-arsenite 5 mM remove 3,474,196 - -0.2 3,474,595 - +0.2 3,474,698 - -0.2 3,474,744 - +0.0 3,474,844 - SGL_RS19140 0.19 +0.1 3,474,943 + SGL_RS19140 0.71 -0.0 3,474,950 - SGL_RS19140 0.74 -0.0 3,474,992 + +0.9 3,475,038 - SGL_RS19525 0.37 -0.1 3,475,205 - -0.2 3,475,207 + +0.2 3,475,355 + SGL_RS17920 0.40 -0.6 3,475,397 + SGL_RS17920 0.49 -0.1 3,475,425 + SGL_RS17920 0.56 -0.4 3,475,492 - SGL_RS17920 0.71 -0.1 3,476,198 + SGL_RS17925 0.26 +0.2 3,476,198 + SGL_RS17925 0.26 +0.3 3,476,220 + SGL_RS17925 0.30 +0.2 3,476,334 - SGL_RS17925 0.51 +0.6 3,476,359 - SGL_RS17925 0.56 +0.1 3,476,384 + SGL_RS17925 0.61 +0.0 3,476,442 - SGL_RS17925 0.71 +0.1
Or see this region's nucleotide sequence