Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07930

Experiment: m-arsenite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07920 and SGL_RS07925 are separated by 140 nucleotidesSGL_RS07925 and SGL_RS07930 are separated by 41 nucleotidesSGL_RS07930 and SGL_RS07935 are separated by 16 nucleotidesSGL_RS07935 and SGL_RS07940 are separated by 1 nucleotides SGL_RS07920: SGL_RS07920 - DUF29 domain-containing protein, at 1,292,215 to 1,292,679 _RS07920 SGL_RS07925: SGL_RS07925 - methyltransferase domain-containing protein, at 1,292,820 to 1,293,356 _RS07925 SGL_RS07930: SGL_RS07930 - hypothetical protein, at 1,293,398 to 1,295,551 _RS07930 SGL_RS07935: SGL_RS07935 - hypothetical protein, at 1,295,568 to 1,296,380 _RS07935 SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894 _RS07940 Position (kb) 1293 1294 1295 1296Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1292.892 kb on + strand, within SGL_RS07925at 1293.061 kb on - strand, within SGL_RS07925at 1293.061 kb on - strand, within SGL_RS07925at 1293.268 kb on + strand, within SGL_RS07925at 1293.821 kb on + strand, within SGL_RS07930at 1294.629 kb on - strand, within SGL_RS07930at 1294.739 kb on + strand, within SGL_RS07930at 1294.900 kb on - strand, within SGL_RS07930at 1294.917 kb on + strand, within SGL_RS07930at 1295.068 kb on + strand, within SGL_RS07930at 1295.074 kb on + strand, within SGL_RS07930at 1295.201 kb on + strand, within SGL_RS07930at 1295.247 kb on + strand, within SGL_RS07930at 1295.287 kb on - strand, within SGL_RS07930at 1295.620 kb on - strandat 1295.817 kb on + strand, within SGL_RS07935at 1295.838 kb on + strand, within SGL_RS07935at 1296.079 kb on - strand, within SGL_RS07935at 1296.398 kb on - strandat 1296.474 kb on + strand, within SGL_RS07940

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Per-strain Table

Position Strand Gene LocusTag Fraction m-arsenite 5 mM
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1,292,892 + SGL_RS07925 0.13 +0.4
1,293,061 - SGL_RS07925 0.45 +0.0
1,293,061 - SGL_RS07925 0.45 +0.2
1,293,268 + SGL_RS07925 0.83 +0.4
1,293,821 + SGL_RS07930 0.20 -3.4
1,294,629 - SGL_RS07930 0.57 -3.0
1,294,739 + SGL_RS07930 0.62 -5.1
1,294,900 - SGL_RS07930 0.70 -7.1
1,294,917 + SGL_RS07930 0.71 -2.8
1,295,068 + SGL_RS07930 0.78 -5.3
1,295,074 + SGL_RS07930 0.78 -5.0
1,295,201 + SGL_RS07930 0.84 -6.3
1,295,247 + SGL_RS07930 0.86 -5.0
1,295,287 - SGL_RS07930 0.88 -4.9
1,295,620 - -2.0
1,295,817 + SGL_RS07935 0.31 -5.3
1,295,838 + SGL_RS07935 0.33 -4.5
1,296,079 - SGL_RS07935 0.63 -6.1
1,296,398 - -0.0
1,296,474 + SGL_RS07940 0.18 +0.0

Or see this region's nucleotide sequence