Experiment: m-arsenite 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17600 and SGL_RS17605 are separated by 238 nucleotides SGL_RS17605 and SGL_RS20025 are separated by 81 nucleotides SGL_RS20025 and SGL_RS19130 are separated by 8 nucleotides
SGL_RS17600: SGL_RS17600 - phycobilisome rod-core linker polypeptide, at 3,403,557 to 3,404,306
_RS17600
SGL_RS17605: SGL_RS17605 - response regulator transcription factor, at 3,404,545 to 3,405,249
_RS17605
SGL_RS20025: SGL_RS20025 - IS5/IS1182 family transposase, at 3,405,331 to 3,405,453
_RS20025
SGL_RS19130: SGL_RS19130 - IS630 family transposase, at 3,405,462 to 3,406,311
_RS19130
Position (kb)
3404
3405
3406 Strain fitness (log2 ratio)
-1
0
1 at 3403.733 kb on + strand, within SGL_RS17600 at 3403.751 kb on + strand, within SGL_RS17600 at 3404.186 kb on - strand, within SGL_RS17600 at 3404.192 kb on + strand, within SGL_RS17600 at 3404.460 kb on - strand at 3404.513 kb on + strand at 3404.613 kb on + strand at 3404.663 kb on - strand, within SGL_RS17605 at 3404.898 kb on + strand, within SGL_RS17605 at 3404.900 kb on + strand, within SGL_RS17605 at 3404.928 kb on - strand, within SGL_RS17605 at 3404.928 kb on - strand, within SGL_RS17605 at 3404.928 kb on - strand, within SGL_RS17605 at 3404.965 kb on - strand, within SGL_RS17605 at 3405.046 kb on - strand, within SGL_RS17605 at 3405.184 kb on + strand at 3405.192 kb on - strand at 3405.351 kb on + strand, within SGL_RS20025 at 3405.491 kb on + strand at 3405.906 kb on - strand, within SGL_RS19130
Per-strain Table
Position Strand Gene LocusTag Fraction m-arsenite 2 mM remove 3,403,733 + SGL_RS17600 0.23 -0.2 3,403,751 + SGL_RS17600 0.26 +0.1 3,404,186 - SGL_RS17600 0.84 -0.6 3,404,192 + SGL_RS17600 0.85 -0.5 3,404,460 - +0.1 3,404,513 + -0.5 3,404,613 + -0.1 3,404,663 - SGL_RS17605 0.17 -0.2 3,404,898 + SGL_RS17605 0.50 -0.4 3,404,900 + SGL_RS17605 0.50 -0.5 3,404,928 - SGL_RS17605 0.54 -0.4 3,404,928 - SGL_RS17605 0.54 -0.0 3,404,928 - SGL_RS17605 0.54 -0.2 3,404,965 - SGL_RS17605 0.60 -0.2 3,405,046 - SGL_RS17605 0.71 -0.6 3,405,184 + -0.1 3,405,192 - +0.0 3,405,351 + SGL_RS20025 0.16 -1.4 3,405,491 + -0.2 3,405,906 - SGL_RS19130 0.52 -0.1
Or see this region's nucleotide sequence