Experiment: m-arsenite 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS19240 and SGL_RS12335 are separated by 76 nucleotides SGL_RS12335 and SGL_RS12340 are separated by 67 nucleotides SGL_RS12340 and SGL_RS12345 are separated by 158 nucleotides
SGL_RS19240: SGL_RS19240 - ABC transporter ATP-binding protein, at 2,227,654 to 2,227,752
_RS19240
SGL_RS12335: SGL_RS12335 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,227,829 to 2,228,377
_RS12335
SGL_RS12340: SGL_RS12340 - hypothetical protein, at 2,228,445 to 2,230,328
_RS12340
SGL_RS12345: SGL_RS12345 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 2,230,487 to 2,231,515
_RS12345
Position (kb)
2228
2229
2230
2231 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2227.547 kb on - strand at 2227.609 kb on - strand at 2227.816 kb on - strand at 2228.171 kb on + strand, within SGL_RS12335 at 2228.205 kb on + strand, within SGL_RS12335 at 2228.213 kb on + strand, within SGL_RS12335 at 2228.213 kb on + strand, within SGL_RS12335 at 2228.218 kb on + strand, within SGL_RS12335 at 2228.218 kb on + strand, within SGL_RS12335 at 2228.221 kb on - strand, within SGL_RS12335 at 2228.243 kb on - strand, within SGL_RS12335 at 2228.247 kb on + strand, within SGL_RS12335 at 2228.271 kb on - strand, within SGL_RS12335 at 2228.431 kb on + strand at 2228.473 kb on - strand at 2228.538 kb on + strand at 2228.715 kb on + strand, within SGL_RS12340 at 2228.755 kb on + strand, within SGL_RS12340 at 2228.815 kb on + strand, within SGL_RS12340 at 2228.857 kb on - strand, within SGL_RS12340 at 2228.952 kb on + strand, within SGL_RS12340 at 2229.190 kb on - strand, within SGL_RS12340 at 2229.216 kb on + strand, within SGL_RS12340 at 2229.386 kb on + strand, within SGL_RS12340 at 2229.446 kb on + strand, within SGL_RS12340 at 2229.456 kb on + strand, within SGL_RS12340 at 2229.489 kb on - strand, within SGL_RS12340 at 2229.546 kb on + strand, within SGL_RS12340 at 2229.605 kb on - strand, within SGL_RS12340 at 2229.841 kb on - strand, within SGL_RS12340 at 2230.040 kb on + strand, within SGL_RS12340 at 2230.048 kb on - strand, within SGL_RS12340 at 2230.137 kb on + strand, within SGL_RS12340 at 2230.137 kb on + strand, within SGL_RS12340 at 2230.137 kb on + strand, within SGL_RS12340 at 2230.147 kb on + strand at 2230.302 kb on + strand at 2230.333 kb on - strand at 2230.395 kb on + strand at 2230.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m-arsenite 2 mM remove 2,227,547 - +0.1 2,227,609 - -0.0 2,227,816 - +0.4 2,228,171 + SGL_RS12335 0.62 -3.0 2,228,205 + SGL_RS12335 0.68 -3.2 2,228,213 + SGL_RS12335 0.70 -1.0 2,228,213 + SGL_RS12335 0.70 -2.2 2,228,218 + SGL_RS12335 0.71 -1.2 2,228,218 + SGL_RS12335 0.71 -1.9 2,228,221 - SGL_RS12335 0.71 -1.8 2,228,243 - SGL_RS12335 0.75 -1.4 2,228,247 + SGL_RS12335 0.76 -3.5 2,228,271 - SGL_RS12335 0.81 -5.1 2,228,431 + -2.4 2,228,473 - -0.0 2,228,538 + -3.3 2,228,715 + SGL_RS12340 0.14 -4.1 2,228,755 + SGL_RS12340 0.16 -3.1 2,228,815 + SGL_RS12340 0.20 -1.9 2,228,857 - SGL_RS12340 0.22 -2.5 2,228,952 + SGL_RS12340 0.27 -4.1 2,229,190 - SGL_RS12340 0.40 -2.5 2,229,216 + SGL_RS12340 0.41 -1.9 2,229,386 + SGL_RS12340 0.50 -2.8 2,229,446 + SGL_RS12340 0.53 -2.7 2,229,456 + SGL_RS12340 0.54 -3.3 2,229,489 - SGL_RS12340 0.55 -2.8 2,229,546 + SGL_RS12340 0.58 -2.9 2,229,605 - SGL_RS12340 0.62 -2.0 2,229,841 - SGL_RS12340 0.74 -2.3 2,230,040 + SGL_RS12340 0.85 -2.2 2,230,048 - SGL_RS12340 0.85 -2.2 2,230,137 + SGL_RS12340 0.90 -3.3 2,230,137 + SGL_RS12340 0.90 -3.0 2,230,137 + SGL_RS12340 0.90 -2.5 2,230,147 + -2.0 2,230,302 + -2.1 2,230,333 - -0.3 2,230,395 + -0.4 2,230,398 - -0.7
Or see this region's nucleotide sequence