Experiment: m-arsenite 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03570 and SGL_RS03575 are separated by 151 nucleotides SGL_RS03575 and SGL_RS19770 are separated by 163 nucleotides SGL_RS19770 and SGL_RS03580 are separated by 4 nucleotides SGL_RS03580 and SGL_RS03585 are separated by 56 nucleotides
SGL_RS03570: SGL_RS03570 - Uma2 family endonuclease, at 357,748 to 358,608
_RS03570
SGL_RS03575: SGL_RS03575 - Uma2 family endonuclease, at 358,760 to 359,350
_RS03575
SGL_RS19770: SGL_RS19770 - DUF4160 domain-containing protein, at 359,514 to 359,663
_RS19770
SGL_RS03580: SGL_RS03580 - DUF2442 domain-containing protein, at 359,668 to 359,973
_RS03580
SGL_RS03585: SGL_RS03585 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 360,030 to 361,166
_RS03585
Position (kb) 358
359
360 Strain fitness (log2 ratio) -1
0
1 at 358.350 kb on + strand, within SGL_RS03570 at 358.357 kb on + strand, within SGL_RS03570 at 358.518 kb on + strand, within SGL_RS03570 at 358.545 kb on + strand at 358.553 kb on - strand at 359.135 kb on - strand, within SGL_RS03575 at 359.477 kb on - strand at 360.007 kb on - strand at 360.074 kb on + strand at 360.203 kb on - strand, within SGL_RS03585
Per-strain Table
Position Strand Gene LocusTag Fraction m-arsenite 2 mM remove 358,350 + SGL_RS03570 0.70 -0.9 358,357 + SGL_RS03570 0.71 +0.4 358,518 + SGL_RS03570 0.89 -0.4 358,545 + +1.2 358,553 - -0.7 359,135 - SGL_RS03575 0.63 +0.2 359,477 - -0.2 360,007 - +0.3 360,074 + -1.7 360,203 - SGL_RS03585 0.15 -1.6
Or see this region's nucleotide sequence