Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20075

Experiment: Nickel (II) sulfate 5 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS12210 and SGL_RS20075 are separated by 103 nucleotidesSGL_RS20075 and SGL_RS12225 are separated by 401 nucleotides SGL_RS12210: SGL_RS12210 - type IV pilus twitching motility protein PilT, at 2,202,944 to 2,204,053 _RS12210 SGL_RS20075: SGL_RS20075 - type II secretion system F family protein, at 2,204,157 to 2,205,372 _RS20075 SGL_RS12225: SGL_RS12225 - ATP-dependent Clp protease proteolytic subunit, at 2,205,774 to 2,206,451 _RS12225 Position (kb) 2204 2205 2206Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 2203.200 kb on + strand, within SGL_RS12210at 2203.296 kb on - strand, within SGL_RS12210at 2203.410 kb on - strand, within SGL_RS12210at 2203.602 kb on - strand, within SGL_RS12210at 2203.637 kb on + strand, within SGL_RS12210at 2203.708 kb on + strand, within SGL_RS12210at 2203.711 kb on - strand, within SGL_RS12210at 2203.716 kb on - strand, within SGL_RS12210at 2203.731 kb on + strand, within SGL_RS12210at 2203.914 kb on + strand, within SGL_RS12210at 2203.919 kb on + strand, within SGL_RS12210at 2204.158 kb on + strandat 2204.235 kb on - strandat 2204.250 kb on - strandat 2204.484 kb on + strand, within SGL_RS20075at 2204.492 kb on - strand, within SGL_RS20075at 2204.494 kb on + strand, within SGL_RS20075at 2204.672 kb on - strand, within SGL_RS20075at 2205.176 kb on - strand, within SGL_RS20075at 2205.450 kb on + strandat 2205.532 kb on + strandat 2205.635 kb on + strandat 2205.656 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
remove
2,203,200 + SGL_RS12210 0.23 +6.7
2,203,296 - SGL_RS12210 0.32 +6.3
2,203,410 - SGL_RS12210 0.42 +6.6
2,203,602 - SGL_RS12210 0.59 +5.9
2,203,637 + SGL_RS12210 0.62 +7.4
2,203,708 + SGL_RS12210 0.69 +8.5
2,203,711 - SGL_RS12210 0.69 +6.8
2,203,716 - SGL_RS12210 0.70 +7.9
2,203,731 + SGL_RS12210 0.71 +7.0
2,203,914 + SGL_RS12210 0.87 +7.6
2,203,919 + SGL_RS12210 0.88 +7.4
2,204,158 + +1.0
2,204,235 - +0.9
2,204,250 - +0.9
2,204,484 + SGL_RS20075 0.27 +1.2
2,204,492 - SGL_RS20075 0.28 +1.0
2,204,494 + SGL_RS20075 0.28 +0.9
2,204,672 - SGL_RS20075 0.42 +0.6
2,205,176 - SGL_RS20075 0.84 +1.1
2,205,450 + +0.6
2,205,532 + -0.3
2,205,635 + -0.0
2,205,656 - +0.9

Or see this region's nucleotide sequence