Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20030

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10670 and SGL_RS20030 are separated by 251 nucleotidesSGL_RS20030 and SGL_RS10680 are separated by 29 nucleotidesSGL_RS10680 and SGL_RS10685 are separated by 184 nucleotides SGL_RS10670: SGL_RS10670 - WecB/TagA/CpsF family glycosyltransferase, at 1,863,247 to 1,863,987 _RS10670 SGL_RS20030: SGL_RS20030 - iron uptake porin, at 1,864,239 to 1,865,003 _RS20030 SGL_RS10680: SGL_RS10680 - hypothetical protein, at 1,865,033 to 1,865,473 _RS10680 SGL_RS10685: SGL_RS10685 - type IV pilus assembly protein PilM, at 1,865,658 to 1,866,761 _RS10685 Position (kb) 1864 1865 1866Strain fitness (log2 ratio) -1 0 1at 1864.142 kb on - strandat 1864.275 kb on + strandat 1864.341 kb on - strand, within SGL_RS20030at 1864.406 kb on + strand, within SGL_RS20030at 1864.414 kb on - strand, within SGL_RS20030at 1864.614 kb on - strand, within SGL_RS20030at 1864.657 kb on - strand, within SGL_RS20030at 1864.987 kb on - strandat 1865.053 kb on - strandat 1865.118 kb on + strand, within SGL_RS10680at 1865.409 kb on - strand, within SGL_RS10680at 1865.425 kb on + strand, within SGL_RS10680at 1865.425 kb on + strand, within SGL_RS10680at 1865.433 kb on - strandat 1865.521 kb on + strandat 1865.907 kb on + strand, within SGL_RS10685at 1865.955 kb on + strand, within SGL_RS10685

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,864,142 - -0.1
1,864,275 + -1.2
1,864,341 - SGL_RS20030 0.13 +1.3
1,864,406 + SGL_RS20030 0.22 +0.9
1,864,414 - SGL_RS20030 0.23 +0.8
1,864,614 - SGL_RS20030 0.49 +1.6
1,864,657 - SGL_RS20030 0.55 +0.6
1,864,987 - +1.3
1,865,053 - +0.3
1,865,118 + SGL_RS10680 0.19 -0.7
1,865,409 - SGL_RS10680 0.85 -0.2
1,865,425 + SGL_RS10680 0.89 -0.7
1,865,425 + SGL_RS10680 0.89 +0.3
1,865,433 - +0.3
1,865,521 + +0.8
1,865,907 + SGL_RS10685 0.23 +0.8
1,865,955 + SGL_RS10685 0.27 -1.3

Or see this region's nucleotide sequence