Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09885 and SGL_RS09890 are separated by 56 nucleotides SGL_RS09890 and SGL_RS09895 are separated by 57 nucleotides SGL_RS09895 and SGL_RS19875 are separated by 11 nucleotides SGL_RS19875 and SGL_RS19215 are separated by 20 nucleotides
SGL_RS09885: SGL_RS09885 - NAD(P)H-quinone oxidoreductase subunit L, at 1,700,893 to 1,701,135
_RS09885
SGL_RS09890: SGL_RS09890 - DUF3007 family protein, at 1,701,192 to 1,701,557
_RS09890
SGL_RS09895: SGL_RS09895 - DUF177 domain-containing protein, at 1,701,615 to 1,702,118
_RS09895
SGL_RS19875: SGL_RS19875 - IS1 family transposase, at 1,702,130 to 1,702,279
_RS19875
SGL_RS19215: SGL_RS19215 - transposase, at 1,702,300 to 1,703,319
_RS19215
Position (kb) 1702
1703 Strain fitness (log2 ratio) -1
0
1
2
3 at 1701.160 kb on - strand at 1701.220 kb on - strand at 1701.331 kb on + strand, within SGL_RS09890 at 1701.371 kb on - strand, within SGL_RS09890 at 1701.376 kb on - strand, within SGL_RS09890 at 1701.452 kb on - strand, within SGL_RS09890 at 1701.481 kb on + strand, within SGL_RS09890 at 1701.582 kb on - strand at 1701.624 kb on - strand at 1701.717 kb on - strand, within SGL_RS09895 at 1701.717 kb on - strand, within SGL_RS09895 at 1701.820 kb on + strand, within SGL_RS09895 at 1701.916 kb on + strand, within SGL_RS09895 at 1701.991 kb on - strand, within SGL_RS09895 at 1702.128 kb on + strand at 1702.176 kb on + strand, within SGL_RS19875 at 1702.199 kb on - strand, within SGL_RS19875 at 1702.493 kb on - strand, within SGL_RS19215 at 1702.549 kb on - strand, within SGL_RS19215 at 1702.893 kb on - strand, within SGL_RS19215 at 1702.917 kb on + strand, within SGL_RS19215 at 1702.930 kb on - strand, within SGL_RS19215 at 1703.056 kb on - strand, within SGL_RS19215 at 1703.095 kb on + strand, within SGL_RS19215 at 1703.153 kb on - strand, within SGL_RS19215
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,701,160 - +1.6 1,701,220 - +1.2 1,701,331 + SGL_RS09890 0.38 +3.4 1,701,371 - SGL_RS09890 0.49 +2.8 1,701,376 - SGL_RS09890 0.50 +3.2 1,701,452 - SGL_RS09890 0.71 +3.3 1,701,481 + SGL_RS09890 0.79 +3.2 1,701,582 - -0.0 1,701,624 - +0.6 1,701,717 - SGL_RS09895 0.20 -0.0 1,701,717 - SGL_RS09895 0.20 +0.3 1,701,820 + SGL_RS09895 0.41 +0.6 1,701,916 + SGL_RS09895 0.60 +0.3 1,701,991 - SGL_RS09895 0.75 +0.6 1,702,128 + -0.1 1,702,176 + SGL_RS19875 0.31 -0.1 1,702,199 - SGL_RS19875 0.46 +1.8 1,702,493 - SGL_RS19215 0.19 -0.4 1,702,549 - SGL_RS19215 0.24 +0.0 1,702,893 - SGL_RS19215 0.58 +0.2 1,702,917 + SGL_RS19215 0.60 -0.2 1,702,930 - SGL_RS19215 0.62 +0.2 1,703,056 - SGL_RS19215 0.74 +0.5 1,703,095 + SGL_RS19215 0.78 +1.0 1,703,153 - SGL_RS19215 0.84 +0.4
Or see this region's nucleotide sequence