Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19730

Experiment: Nickel (II) sulfate 5 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS01515 and SGL_RS19730 are separated by 31 nucleotidesSGL_RS19730 and SGL_RS19320 overlap by 53 nucleotidesSGL_RS19320 and SGL_RS01525 are separated by 327 nucleotides SGL_RS01515: SGL_RS01515 - hypothetical protein, at 27,957 to 31,322 _RS01515 SGL_RS19730: SGL_RS19730 - DNA cytosine methyltransferase, at 31,354 to 31,461 _RS19730 SGL_RS19320: SGL_RS19320 - hypothetical protein, at 31,409 to 31,801 _RS19320 SGL_RS01525: SGL_RS01525 - cytidine deaminase, at 32,129 to 32,545 _RS01525 Position (kb) 31 32Strain fitness (log2 ratio) -1 0 1at 30.395 kb on + strand, within SGL_RS01515at 30.402 kb on - strand, within SGL_RS01515at 30.431 kb on - strand, within SGL_RS01515at 30.460 kb on - strand, within SGL_RS01515at 30.460 kb on - strand, within SGL_RS01515at 30.511 kb on - strand, within SGL_RS01515at 30.616 kb on + strand, within SGL_RS01515at 30.654 kb on + strand, within SGL_RS01515at 30.676 kb on + strand, within SGL_RS01515at 30.766 kb on - strand, within SGL_RS01515at 30.804 kb on + strand, within SGL_RS01515at 30.804 kb on + strand, within SGL_RS01515at 30.812 kb on - strand, within SGL_RS01515at 30.817 kb on - strand, within SGL_RS01515at 30.833 kb on - strand, within SGL_RS01515at 30.855 kb on + strand, within SGL_RS01515at 30.978 kb on + strand, within SGL_RS01515at 30.991 kb on - strandat 31.016 kb on + strandat 31.029 kb on - strandat 31.111 kb on + strandat 31.172 kb on + strandat 31.347 kb on + strandat 31.347 kb on + strandat 31.381 kb on - strand, within SGL_RS19730at 31.387 kb on - strand, within SGL_RS19730at 31.389 kb on - strand, within SGL_RS19730at 31.511 kb on - strand, within SGL_RS19320at 31.545 kb on + strand, within SGL_RS19320at 31.587 kb on - strand, within SGL_RS19320at 31.587 kb on - strand, within SGL_RS19320at 31.722 kb on - strand, within SGL_RS19320at 32.079 kb on - strandat 32.089 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
remove
30,395 + SGL_RS01515 0.72 +0.2
30,402 - SGL_RS01515 0.73 +0.5
30,431 - SGL_RS01515 0.73 +0.7
30,460 - SGL_RS01515 0.74 +0.0
30,460 - SGL_RS01515 0.74 +0.7
30,511 - SGL_RS01515 0.76 +0.5
30,616 + SGL_RS01515 0.79 -0.3
30,654 + SGL_RS01515 0.80 +0.0
30,676 + SGL_RS01515 0.81 +0.4
30,766 - SGL_RS01515 0.83 +0.9
30,804 + SGL_RS01515 0.85 -0.5
30,804 + SGL_RS01515 0.85 +0.2
30,812 - SGL_RS01515 0.85 +0.3
30,817 - SGL_RS01515 0.85 -0.1
30,833 - SGL_RS01515 0.85 +0.4
30,855 + SGL_RS01515 0.86 +0.0
30,978 + SGL_RS01515 0.90 -0.1
30,991 - +0.4
31,016 + +0.2
31,029 - +0.6
31,111 + +0.8
31,172 + +1.0
31,347 + -0.3
31,347 + +1.3
31,381 - SGL_RS19730 0.25 +1.4
31,387 - SGL_RS19730 0.31 +1.0
31,389 - SGL_RS19730 0.32 +0.4
31,511 - SGL_RS19320 0.26 -0.3
31,545 + SGL_RS19320 0.35 +0.2
31,587 - SGL_RS19320 0.45 +0.4
31,587 - SGL_RS19320 0.45 +0.0
31,722 - SGL_RS19320 0.80 -0.5
32,079 - -0.7
32,089 + +0.1

Or see this region's nucleotide sequence