Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18085

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19150 and SGL_RS18085 are separated by 367 nucleotidesSGL_RS18085 and SGL_RS18090 are separated by 360 nucleotides SGL_RS19150: SGL_RS19150 - IS701 family transposase, at 3,513,235 to 3,513,864 _RS19150 SGL_RS18085: SGL_RS18085 - molecular chaperone HtpG, at 3,514,232 to 3,516,208 _RS18085 SGL_RS18090: SGL_RS18090 - glucose-1-phosphate adenylyltransferase, at 3,516,569 to 3,517,858 _RS18090 Position (kb) 3514 3515 3516 3517Strain fitness (log2 ratio) -2 -1 0 1at 3514.047 kb on + strandat 3514.095 kb on + strandat 3514.159 kb on - strandat 3514.164 kb on - strandat 3514.192 kb on - strandat 3514.281 kb on - strandat 3514.445 kb on + strand, within SGL_RS18085at 3514.527 kb on + strand, within SGL_RS18085at 3514.538 kb on + strand, within SGL_RS18085at 3514.673 kb on + strand, within SGL_RS18085at 3514.840 kb on + strand, within SGL_RS18085at 3515.238 kb on + strand, within SGL_RS18085at 3515.246 kb on - strand, within SGL_RS18085at 3515.548 kb on - strand, within SGL_RS18085at 3515.653 kb on - strand, within SGL_RS18085at 3515.688 kb on + strand, within SGL_RS18085at 3515.693 kb on + strand, within SGL_RS18085at 3515.694 kb on - strand, within SGL_RS18085at 3515.694 kb on - strand, within SGL_RS18085at 3515.734 kb on + strand, within SGL_RS18085at 3515.768 kb on - strand, within SGL_RS18085at 3515.785 kb on + strand, within SGL_RS18085at 3515.837 kb on + strand, within SGL_RS18085at 3516.292 kb on - strandat 3516.434 kb on + strandat 3516.555 kb on + strandat 3516.590 kb on + strandat 3516.781 kb on - strand, within SGL_RS18090

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,514,047 + -0.5
3,514,095 + +0.0
3,514,159 - -1.1
3,514,164 - -0.2
3,514,192 - +0.2
3,514,281 - +1.0
3,514,445 + SGL_RS18085 0.11 +1.2
3,514,527 + SGL_RS18085 0.15 +0.3
3,514,538 + SGL_RS18085 0.15 +1.1
3,514,673 + SGL_RS18085 0.22 +1.4
3,514,840 + SGL_RS18085 0.31 +1.0
3,515,238 + SGL_RS18085 0.51 +0.8
3,515,246 - SGL_RS18085 0.51 +1.0
3,515,548 - SGL_RS18085 0.67 +1.6
3,515,653 - SGL_RS18085 0.72 +1.0
3,515,688 + SGL_RS18085 0.74 -0.3
3,515,693 + SGL_RS18085 0.74 +1.1
3,515,694 - SGL_RS18085 0.74 +1.6
3,515,694 - SGL_RS18085 0.74 +0.9
3,515,734 + SGL_RS18085 0.76 +1.4
3,515,768 - SGL_RS18085 0.78 +0.7
3,515,785 + SGL_RS18085 0.79 +1.2
3,515,837 + SGL_RS18085 0.81 +1.5
3,516,292 - +0.2
3,516,434 + -0.5
3,516,555 + -2.4
3,516,590 + -2.1
3,516,781 - SGL_RS18090 0.16 -0.9

Or see this region's nucleotide sequence