Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17750

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17740 and SGL_RS17750 are separated by 389 nucleotidesSGL_RS17750 and SGL_RS17755 are separated by 126 nucleotidesSGL_RS17755 and SGL_RS17760 are separated by 170 nucleotides SGL_RS17740: SGL_RS17740 - phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent), at 3,431,317 to 3,432,972 _RS17740 SGL_RS17750: SGL_RS17750 - circadian clock protein KaiA, at 3,433,362 to 3,434,261 _RS17750 SGL_RS17755: SGL_RS17755 - circadian clock protein KaiB, at 3,434,388 to 3,434,705 _RS17755 SGL_RS17760: SGL_RS17760 - circadian clock protein KaiC, at 3,434,876 to 3,436,435 _RS17760 Position (kb) 3433 3434 3435Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3432.430 kb on + strand, within SGL_RS17740at 3432.430 kb on + strand, within SGL_RS17740at 3432.438 kb on - strand, within SGL_RS17740at 3432.438 kb on - strand, within SGL_RS17740at 3432.697 kb on - strand, within SGL_RS17740at 3432.697 kb on - strand, within SGL_RS17740at 3432.716 kb on - strand, within SGL_RS17740at 3432.717 kb on - strand, within SGL_RS17740at 3432.734 kb on + strand, within SGL_RS17740at 3432.747 kb on - strand, within SGL_RS17740at 3432.765 kb on - strand, within SGL_RS17740at 3432.811 kb on - strandat 3432.853 kb on - strandat 3432.884 kb on + strandat 3433.010 kb on + strandat 3433.063 kb on - strandat 3433.143 kb on - strandat 3433.153 kb on - strandat 3433.198 kb on - strandat 3433.365 kb on + strandat 3433.415 kb on + strandat 3433.449 kb on - strandat 3433.493 kb on + strand, within SGL_RS17750at 3433.630 kb on - strand, within SGL_RS17750at 3433.647 kb on + strand, within SGL_RS17750at 3433.651 kb on - strand, within SGL_RS17750at 3433.698 kb on + strand, within SGL_RS17750at 3433.710 kb on + strand, within SGL_RS17750at 3433.751 kb on + strand, within SGL_RS17750at 3433.759 kb on - strand, within SGL_RS17750at 3433.824 kb on - strand, within SGL_RS17750at 3434.447 kb on - strand, within SGL_RS17755at 3434.525 kb on - strand, within SGL_RS17755at 3434.661 kb on - strand, within SGL_RS17755at 3434.997 kb on + strandat 3435.002 kb on + strandat 3435.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,432,430 + SGL_RS17740 0.67 -1.3
3,432,430 + SGL_RS17740 0.67 -1.3
3,432,438 - SGL_RS17740 0.68 -1.5
3,432,438 - SGL_RS17740 0.68 -2.3
3,432,697 - SGL_RS17740 0.83 -2.4
3,432,697 - SGL_RS17740 0.83 -2.0
3,432,716 - SGL_RS17740 0.84 -0.7
3,432,717 - SGL_RS17740 0.85 -2.2
3,432,734 + SGL_RS17740 0.86 -0.9
3,432,747 - SGL_RS17740 0.86 -1.4
3,432,765 - SGL_RS17740 0.87 -0.6
3,432,811 - -2.1
3,432,853 - +0.7
3,432,884 + -0.3
3,433,010 + +4.3
3,433,063 - -0.1
3,433,143 - +0.4
3,433,153 - +0.3
3,433,198 - -0.2
3,433,365 + +2.0
3,433,415 + +2.2
3,433,449 - +1.8
3,433,493 + SGL_RS17750 0.15 +2.1
3,433,630 - SGL_RS17750 0.30 +2.3
3,433,647 + SGL_RS17750 0.32 +2.2
3,433,651 - SGL_RS17750 0.32 +2.8
3,433,698 + SGL_RS17750 0.37 +2.2
3,433,710 + SGL_RS17750 0.39 +2.2
3,433,751 + SGL_RS17750 0.43 +2.7
3,433,759 - SGL_RS17750 0.44 +1.7
3,433,824 - SGL_RS17750 0.51 +3.7
3,434,447 - SGL_RS17755 0.19 -0.7
3,434,525 - SGL_RS17755 0.43 -0.3
3,434,661 - SGL_RS17755 0.86 +1.0
3,434,997 + +4.2
3,435,002 + +3.5
3,435,010 - +3.5

Or see this region's nucleotide sequence