Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17680 and SGL_RS17685 are separated by 549 nucleotides SGL_RS17685 and SGL_RS17690 are separated by 12 nucleotides SGL_RS17690 and SGL_RS17695 are separated by 18 nucleotides
SGL_RS17680: SGL_RS17680 - hypothetical protein, at 3,421,907 to 3,422,482
_RS17680
SGL_RS17685: SGL_RS17685 - ArsB/NhaD family transporter, at 3,423,032 to 3,424,381
_RS17685
SGL_RS17690: SGL_RS17690 - hypothetical protein, at 3,424,394 to 3,424,648
_RS17690
SGL_RS17695: SGL_RS17695 - DNA adenine methylase, at 3,424,667 to 3,425,524
_RS17695
Position (kb)
3423
3424
3425 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3422.237 kb on - strand, within SGL_RS17680 at 3423.194 kb on + strand, within SGL_RS17685 at 3423.202 kb on - strand, within SGL_RS17685 at 3423.333 kb on + strand, within SGL_RS17685 at 3423.333 kb on + strand, within SGL_RS17685 at 3423.399 kb on - strand, within SGL_RS17685 at 3423.410 kb on - strand, within SGL_RS17685 at 3423.705 kb on - strand, within SGL_RS17685 at 3423.830 kb on - strand, within SGL_RS17685 at 3423.830 kb on - strand, within SGL_RS17685 at 3423.990 kb on + strand, within SGL_RS17685 at 3424.083 kb on + strand, within SGL_RS17685 at 3424.091 kb on - strand, within SGL_RS17685 at 3424.204 kb on - strand, within SGL_RS17685 at 3424.364 kb on - strand at 3424.520 kb on + strand, within SGL_RS17690 at 3424.625 kb on + strand at 3424.858 kb on + strand, within SGL_RS17695
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 3,422,237 - SGL_RS17680 0.57 -0.2 3,423,194 + SGL_RS17685 0.12 -0.6 3,423,202 - SGL_RS17685 0.13 -3.0 3,423,333 + SGL_RS17685 0.22 -2.2 3,423,333 + SGL_RS17685 0.22 -1.5 3,423,399 - SGL_RS17685 0.27 -2.4 3,423,410 - SGL_RS17685 0.28 -1.7 3,423,705 - SGL_RS17685 0.50 -2.7 3,423,830 - SGL_RS17685 0.59 +1.5 3,423,830 - SGL_RS17685 0.59 -3.6 3,423,990 + SGL_RS17685 0.71 -3.0 3,424,083 + SGL_RS17685 0.78 -2.3 3,424,091 - SGL_RS17685 0.78 -2.1 3,424,204 - SGL_RS17685 0.87 -3.6 3,424,364 - -2.9 3,424,520 + SGL_RS17690 0.49 +0.1 3,424,625 + +0.5 3,424,858 + SGL_RS17695 0.22 -0.5
Or see this region's nucleotide sequence