Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17625

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17620 and SGL_RS17625 are separated by 228 nucleotidesSGL_RS17625 and SGL_RS17630 are separated by 38 nucleotides SGL_RS17620: SGL_RS17620 - 3-isopropylmalate dehydratase large subunit, at 3,406,416 to 3,407,822 _RS17620 SGL_RS17625: SGL_RS17625 - EAL domain-containing protein, at 3,408,051 to 3,409,316 _RS17625 SGL_RS17630: SGL_RS17630 - glucosylglycerol 3-phosphatase, at 3,409,355 to 3,410,623 _RS17630 Position (kb) 3408 3409 3410Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3407.436 kb on - strand, within SGL_RS17620at 3407.829 kb on + strandat 3407.837 kb on - strandat 3407.837 kb on - strandat 3407.857 kb on + strandat 3407.881 kb on - strandat 3407.898 kb on + strandat 3407.903 kb on + strandat 3407.999 kb on + strandat 3408.160 kb on + strandat 3408.235 kb on + strand, within SGL_RS17625at 3408.457 kb on - strand, within SGL_RS17625at 3408.738 kb on - strand, within SGL_RS17625at 3408.967 kb on - strand, within SGL_RS17625at 3408.979 kb on - strand, within SGL_RS17625at 3409.038 kb on + strand, within SGL_RS17625at 3409.039 kb on + strand, within SGL_RS17625at 3409.039 kb on + strand, within SGL_RS17625at 3409.067 kb on - strand, within SGL_RS17625at 3409.081 kb on - strand, within SGL_RS17625at 3409.159 kb on - strand, within SGL_RS17625at 3409.415 kb on - strandat 3409.471 kb on - strandat 3409.580 kb on + strand, within SGL_RS17630at 3409.642 kb on - strand, within SGL_RS17630at 3409.643 kb on - strand, within SGL_RS17630at 3409.643 kb on - strand, within SGL_RS17630at 3409.650 kb on + strand, within SGL_RS17630at 3409.657 kb on + strand, within SGL_RS17630at 3409.710 kb on - strand, within SGL_RS17630at 3409.846 kb on - strand, within SGL_RS17630at 3410.064 kb on - strand, within SGL_RS17630at 3410.077 kb on - strand, within SGL_RS17630at 3410.155 kb on + strand, within SGL_RS17630at 3410.165 kb on + strand, within SGL_RS17630at 3410.169 kb on + strand, within SGL_RS17630at 3410.266 kb on - strand, within SGL_RS17630

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,407,436 - SGL_RS17620 0.72 -0.9
3,407,829 + +2.5
3,407,837 - +4.7
3,407,837 - +2.7
3,407,857 + -2.3
3,407,881 - +5.8
3,407,898 + +0.7
3,407,903 + +0.3
3,407,999 + +0.9
3,408,160 + +2.2
3,408,235 + SGL_RS17625 0.15 +2.3
3,408,457 - SGL_RS17625 0.32 +2.2
3,408,738 - SGL_RS17625 0.54 +2.2
3,408,967 - SGL_RS17625 0.72 +2.9
3,408,979 - SGL_RS17625 0.73 +1.9
3,409,038 + SGL_RS17625 0.78 +2.5
3,409,039 + SGL_RS17625 0.78 +2.4
3,409,039 + SGL_RS17625 0.78 +2.4
3,409,067 - SGL_RS17625 0.80 +1.8
3,409,081 - SGL_RS17625 0.81 +2.4
3,409,159 - SGL_RS17625 0.88 +2.0
3,409,415 - -0.2
3,409,471 - +0.1
3,409,580 + SGL_RS17630 0.18 -0.1
3,409,642 - SGL_RS17630 0.23 -0.1
3,409,643 - SGL_RS17630 0.23 -0.1
3,409,643 - SGL_RS17630 0.23 -0.3
3,409,650 + SGL_RS17630 0.23 -0.3
3,409,657 + SGL_RS17630 0.24 +1.4
3,409,710 - SGL_RS17630 0.28 -0.1
3,409,846 - SGL_RS17630 0.39 -1.0
3,410,064 - SGL_RS17630 0.56 -0.3
3,410,077 - SGL_RS17630 0.57 -0.1
3,410,155 + SGL_RS17630 0.63 -0.5
3,410,165 + SGL_RS17630 0.64 +0.0
3,410,169 + SGL_RS17630 0.64 +0.2
3,410,266 - SGL_RS17630 0.72 +0.1

Or see this region's nucleotide sequence