Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17495

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17490 and SGL_RS17495 are separated by 177 nucleotidesSGL_RS17495 and SGL_RS17500 are separated by 207 nucleotidesSGL_RS17500 and SGL_RS17505 are separated by 304 nucleotides SGL_RS17490: SGL_RS17490 - TIGR00266 family protein, at 3,381,543 to 3,382,397 _RS17490 SGL_RS17495: SGL_RS17495 - peptidoglycan editing factor PgeF, at 3,382,575 to 3,383,369 _RS17495 SGL_RS17500: SGL_RS17500 - DUF370 domain-containing protein, at 3,383,577 to 3,383,846 _RS17500 SGL_RS17505: SGL_RS17505 - mechanosensitive ion channel, at 3,384,151 to 3,385,590 _RS17505 Position (kb) 3382 3383 3384Strain fitness (log2 ratio) -1 0 1at 3381.580 kb on + strandat 3381.580 kb on + strandat 3381.635 kb on - strand, within SGL_RS17490at 3381.676 kb on + strand, within SGL_RS17490at 3381.749 kb on + strand, within SGL_RS17490at 3381.803 kb on - strand, within SGL_RS17490at 3381.867 kb on + strand, within SGL_RS17490at 3381.868 kb on + strand, within SGL_RS17490at 3382.013 kb on - strand, within SGL_RS17490at 3382.125 kb on - strand, within SGL_RS17490at 3382.186 kb on - strand, within SGL_RS17490at 3382.272 kb on + strand, within SGL_RS17490at 3382.278 kb on - strand, within SGL_RS17490at 3382.280 kb on - strand, within SGL_RS17490at 3382.294 kb on - strand, within SGL_RS17490at 3382.522 kb on - strandat 3382.597 kb on + strandat 3382.631 kb on + strandat 3382.769 kb on - strand, within SGL_RS17495at 3382.811 kb on - strand, within SGL_RS17495at 3382.813 kb on + strand, within SGL_RS17495at 3382.835 kb on + strand, within SGL_RS17495at 3383.025 kb on - strand, within SGL_RS17495at 3383.028 kb on + strand, within SGL_RS17495at 3383.036 kb on - strand, within SGL_RS17495at 3383.037 kb on - strand, within SGL_RS17495at 3383.054 kb on + strand, within SGL_RS17495at 3383.182 kb on + strand, within SGL_RS17495at 3383.338 kb on - strandat 3383.448 kb on + strandat 3383.448 kb on + strandat 3383.524 kb on - strandat 3383.671 kb on - strand, within SGL_RS17500at 3383.699 kb on + strand, within SGL_RS17500at 3383.843 kb on + strandat 3384.259 kb on - strandat 3384.279 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,381,580 + +0.7
3,381,580 + +0.4
3,381,635 - SGL_RS17490 0.11 +0.5
3,381,676 + SGL_RS17490 0.16 +0.6
3,381,749 + SGL_RS17490 0.24 -0.9
3,381,803 - SGL_RS17490 0.30 +0.4
3,381,867 + SGL_RS17490 0.38 -1.7
3,381,868 + SGL_RS17490 0.38 +0.5
3,382,013 - SGL_RS17490 0.55 +0.3
3,382,125 - SGL_RS17490 0.68 +0.1
3,382,186 - SGL_RS17490 0.75 +1.6
3,382,272 + SGL_RS17490 0.85 +1.6
3,382,278 - SGL_RS17490 0.86 +0.4
3,382,280 - SGL_RS17490 0.86 +0.5
3,382,294 - SGL_RS17490 0.88 +0.9
3,382,522 - +1.2
3,382,597 + +0.1
3,382,631 + +1.1
3,382,769 - SGL_RS17495 0.24 +1.5
3,382,811 - SGL_RS17495 0.30 +0.9
3,382,813 + SGL_RS17495 0.30 +1.2
3,382,835 + SGL_RS17495 0.33 +1.4
3,383,025 - SGL_RS17495 0.57 +1.5
3,383,028 + SGL_RS17495 0.57 +1.7
3,383,036 - SGL_RS17495 0.58 +1.6
3,383,037 - SGL_RS17495 0.58 +1.3
3,383,054 + SGL_RS17495 0.60 +0.6
3,383,182 + SGL_RS17495 0.76 +0.9
3,383,338 - +0.8
3,383,448 + +0.5
3,383,448 + +0.5
3,383,524 - -0.5
3,383,671 - SGL_RS17500 0.35 -0.3
3,383,699 + SGL_RS17500 0.45 -0.6
3,383,843 + -1.2
3,384,259 - +0.4
3,384,279 + +0.1

Or see this region's nucleotide sequence