Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17490 and SGL_RS17495 are separated by 177 nucleotides SGL_RS17495 and SGL_RS17500 are separated by 207 nucleotides SGL_RS17500 and SGL_RS17505 are separated by 304 nucleotides
SGL_RS17490: SGL_RS17490 - TIGR00266 family protein, at 3,381,543 to 3,382,397
_RS17490
SGL_RS17495: SGL_RS17495 - peptidoglycan editing factor PgeF, at 3,382,575 to 3,383,369
_RS17495
SGL_RS17500: SGL_RS17500 - DUF370 domain-containing protein, at 3,383,577 to 3,383,846
_RS17500
SGL_RS17505: SGL_RS17505 - mechanosensitive ion channel, at 3,384,151 to 3,385,590
_RS17505
Position (kb)
3382
3383
3384 Strain fitness (log2 ratio)
-1
0
1 at 3381.580 kb on + strand at 3381.580 kb on + strand at 3381.635 kb on - strand, within SGL_RS17490 at 3381.676 kb on + strand, within SGL_RS17490 at 3381.749 kb on + strand, within SGL_RS17490 at 3381.803 kb on - strand, within SGL_RS17490 at 3381.867 kb on + strand, within SGL_RS17490 at 3381.868 kb on + strand, within SGL_RS17490 at 3382.013 kb on - strand, within SGL_RS17490 at 3382.125 kb on - strand, within SGL_RS17490 at 3382.186 kb on - strand, within SGL_RS17490 at 3382.272 kb on + strand, within SGL_RS17490 at 3382.278 kb on - strand, within SGL_RS17490 at 3382.280 kb on - strand, within SGL_RS17490 at 3382.294 kb on - strand, within SGL_RS17490 at 3382.522 kb on - strand at 3382.597 kb on + strand at 3382.631 kb on + strand at 3382.769 kb on - strand, within SGL_RS17495 at 3382.811 kb on - strand, within SGL_RS17495 at 3382.813 kb on + strand, within SGL_RS17495 at 3382.835 kb on + strand, within SGL_RS17495 at 3383.025 kb on - strand, within SGL_RS17495 at 3383.028 kb on + strand, within SGL_RS17495 at 3383.036 kb on - strand, within SGL_RS17495 at 3383.037 kb on - strand, within SGL_RS17495 at 3383.054 kb on + strand, within SGL_RS17495 at 3383.182 kb on + strand, within SGL_RS17495 at 3383.338 kb on - strand at 3383.448 kb on + strand at 3383.448 kb on + strand at 3383.524 kb on - strand at 3383.671 kb on - strand, within SGL_RS17500 at 3383.699 kb on + strand, within SGL_RS17500 at 3383.843 kb on + strand at 3384.259 kb on - strand at 3384.279 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 3,381,580 + +0.7 3,381,580 + +0.4 3,381,635 - SGL_RS17490 0.11 +0.5 3,381,676 + SGL_RS17490 0.16 +0.6 3,381,749 + SGL_RS17490 0.24 -0.9 3,381,803 - SGL_RS17490 0.30 +0.4 3,381,867 + SGL_RS17490 0.38 -1.7 3,381,868 + SGL_RS17490 0.38 +0.5 3,382,013 - SGL_RS17490 0.55 +0.3 3,382,125 - SGL_RS17490 0.68 +0.1 3,382,186 - SGL_RS17490 0.75 +1.6 3,382,272 + SGL_RS17490 0.85 +1.6 3,382,278 - SGL_RS17490 0.86 +0.4 3,382,280 - SGL_RS17490 0.86 +0.5 3,382,294 - SGL_RS17490 0.88 +0.9 3,382,522 - +1.2 3,382,597 + +0.1 3,382,631 + +1.1 3,382,769 - SGL_RS17495 0.24 +1.5 3,382,811 - SGL_RS17495 0.30 +0.9 3,382,813 + SGL_RS17495 0.30 +1.2 3,382,835 + SGL_RS17495 0.33 +1.4 3,383,025 - SGL_RS17495 0.57 +1.5 3,383,028 + SGL_RS17495 0.57 +1.7 3,383,036 - SGL_RS17495 0.58 +1.6 3,383,037 - SGL_RS17495 0.58 +1.3 3,383,054 + SGL_RS17495 0.60 +0.6 3,383,182 + SGL_RS17495 0.76 +0.9 3,383,338 - +0.8 3,383,448 + +0.5 3,383,448 + +0.5 3,383,524 - -0.5 3,383,671 - SGL_RS17500 0.35 -0.3 3,383,699 + SGL_RS17500 0.45 -0.6 3,383,843 + -1.2 3,384,259 - +0.4 3,384,279 + +0.1
Or see this region's nucleotide sequence