Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17390 and SGL_RS17395 are separated by 170 nucleotides SGL_RS17395 and SGL_RS17400 are separated by 99 nucleotides
SGL_RS17390: SGL_RS17390 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 3,360,732 to 3,361,886
_RS17390
SGL_RS17395: SGL_RS17395 - helix-turn-helix domain-containing protein, at 3,362,057 to 3,363,166
_RS17395
SGL_RS17400: SGL_RS17400 - mannose-1-phosphate guanyltransferase, at 3,363,266 to 3,365,797
_RS17400
Position (kb)
3362
3363
3364 Strain fitness (log2 ratio)
-2
-1
0
1 at 3361.573 kb on - strand, within SGL_RS17390 at 3362.168 kb on - strand, within SGL_RS17395 at 3362.336 kb on - strand, within SGL_RS17395 at 3362.420 kb on + strand, within SGL_RS17395 at 3362.428 kb on - strand, within SGL_RS17395 at 3362.428 kb on - strand, within SGL_RS17395 at 3362.433 kb on - strand, within SGL_RS17395 at 3362.508 kb on + strand, within SGL_RS17395 at 3362.538 kb on + strand, within SGL_RS17395 at 3362.546 kb on - strand, within SGL_RS17395 at 3362.686 kb on - strand, within SGL_RS17395 at 3362.825 kb on - strand, within SGL_RS17395 at 3363.197 kb on + strand at 3363.245 kb on + strand at 3363.253 kb on - strand at 3363.264 kb on - strand at 3363.312 kb on + strand at 3363.380 kb on + strand at 3363.388 kb on + strand at 3363.543 kb on + strand, within SGL_RS17400 at 3363.551 kb on - strand, within SGL_RS17400 at 3363.657 kb on + strand, within SGL_RS17400 at 3363.706 kb on - strand, within SGL_RS17400 at 3363.742 kb on - strand, within SGL_RS17400 at 3363.742 kb on - strand, within SGL_RS17400 at 3363.742 kb on - strand, within SGL_RS17400 at 3363.742 kb on - strand, within SGL_RS17400 at 3363.746 kb on + strand, within SGL_RS17400 at 3363.960 kb on + strand, within SGL_RS17400 at 3364.053 kb on - strand, within SGL_RS17400 at 3364.104 kb on + strand, within SGL_RS17400 at 3364.112 kb on - strand, within SGL_RS17400
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 3,361,573 - SGL_RS17390 0.73 -2.3 3,362,168 - SGL_RS17395 0.10 +0.8 3,362,336 - SGL_RS17395 0.25 +1.2 3,362,420 + SGL_RS17395 0.33 +1.1 3,362,428 - SGL_RS17395 0.33 +0.6 3,362,428 - SGL_RS17395 0.33 +1.0 3,362,433 - SGL_RS17395 0.34 +0.4 3,362,508 + SGL_RS17395 0.41 +1.1 3,362,538 + SGL_RS17395 0.43 +0.9 3,362,546 - SGL_RS17395 0.44 -0.0 3,362,686 - SGL_RS17395 0.57 +1.0 3,362,825 - SGL_RS17395 0.69 +0.8 3,363,197 + +0.9 3,363,245 + -0.2 3,363,253 - -0.6 3,363,264 - +0.0 3,363,312 + -0.6 3,363,380 + -0.3 3,363,388 + -0.6 3,363,543 + SGL_RS17400 0.11 +0.1 3,363,551 - SGL_RS17400 0.11 -0.3 3,363,657 + SGL_RS17400 0.15 -1.5 3,363,706 - SGL_RS17400 0.17 -0.7 3,363,742 - SGL_RS17400 0.19 -0.7 3,363,742 - SGL_RS17400 0.19 -0.9 3,363,742 - SGL_RS17400 0.19 -0.2 3,363,742 - SGL_RS17400 0.19 -0.0 3,363,746 + SGL_RS17400 0.19 -0.2 3,363,960 + SGL_RS17400 0.27 -0.6 3,364,053 - SGL_RS17400 0.31 -1.3 3,364,104 + SGL_RS17400 0.33 -0.1 3,364,112 - SGL_RS17400 0.33 -0.5
Or see this region's nucleotide sequence