Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17395

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17390 and SGL_RS17395 are separated by 170 nucleotidesSGL_RS17395 and SGL_RS17400 are separated by 99 nucleotides SGL_RS17390: SGL_RS17390 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 3,360,732 to 3,361,886 _RS17390 SGL_RS17395: SGL_RS17395 - helix-turn-helix domain-containing protein, at 3,362,057 to 3,363,166 _RS17395 SGL_RS17400: SGL_RS17400 - mannose-1-phosphate guanyltransferase, at 3,363,266 to 3,365,797 _RS17400 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -2 -1 0 1at 3361.573 kb on - strand, within SGL_RS17390at 3362.168 kb on - strand, within SGL_RS17395at 3362.336 kb on - strand, within SGL_RS17395at 3362.420 kb on + strand, within SGL_RS17395at 3362.428 kb on - strand, within SGL_RS17395at 3362.428 kb on - strand, within SGL_RS17395at 3362.433 kb on - strand, within SGL_RS17395at 3362.508 kb on + strand, within SGL_RS17395at 3362.538 kb on + strand, within SGL_RS17395at 3362.546 kb on - strand, within SGL_RS17395at 3362.686 kb on - strand, within SGL_RS17395at 3362.825 kb on - strand, within SGL_RS17395at 3363.197 kb on + strandat 3363.245 kb on + strandat 3363.253 kb on - strandat 3363.264 kb on - strandat 3363.312 kb on + strandat 3363.380 kb on + strandat 3363.388 kb on + strandat 3363.543 kb on + strand, within SGL_RS17400at 3363.551 kb on - strand, within SGL_RS17400at 3363.657 kb on + strand, within SGL_RS17400at 3363.706 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.742 kb on - strand, within SGL_RS17400at 3363.746 kb on + strand, within SGL_RS17400at 3363.960 kb on + strand, within SGL_RS17400at 3364.053 kb on - strand, within SGL_RS17400at 3364.104 kb on + strand, within SGL_RS17400at 3364.112 kb on - strand, within SGL_RS17400

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,361,573 - SGL_RS17390 0.73 -2.3
3,362,168 - SGL_RS17395 0.10 +0.8
3,362,336 - SGL_RS17395 0.25 +1.2
3,362,420 + SGL_RS17395 0.33 +1.1
3,362,428 - SGL_RS17395 0.33 +0.6
3,362,428 - SGL_RS17395 0.33 +1.0
3,362,433 - SGL_RS17395 0.34 +0.4
3,362,508 + SGL_RS17395 0.41 +1.1
3,362,538 + SGL_RS17395 0.43 +0.9
3,362,546 - SGL_RS17395 0.44 -0.0
3,362,686 - SGL_RS17395 0.57 +1.0
3,362,825 - SGL_RS17395 0.69 +0.8
3,363,197 + +0.9
3,363,245 + -0.2
3,363,253 - -0.6
3,363,264 - +0.0
3,363,312 + -0.6
3,363,380 + -0.3
3,363,388 + -0.6
3,363,543 + SGL_RS17400 0.11 +0.1
3,363,551 - SGL_RS17400 0.11 -0.3
3,363,657 + SGL_RS17400 0.15 -1.5
3,363,706 - SGL_RS17400 0.17 -0.7
3,363,742 - SGL_RS17400 0.19 -0.7
3,363,742 - SGL_RS17400 0.19 -0.9
3,363,742 - SGL_RS17400 0.19 -0.2
3,363,742 - SGL_RS17400 0.19 -0.0
3,363,746 + SGL_RS17400 0.19 -0.2
3,363,960 + SGL_RS17400 0.27 -0.6
3,364,053 - SGL_RS17400 0.31 -1.3
3,364,104 + SGL_RS17400 0.33 -0.1
3,364,112 - SGL_RS17400 0.33 -0.5

Or see this region's nucleotide sequence